Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc39g00005 ATGAACGAAGGAGCTTCCGATAATAATCCTGCAGATCTCAACAACGAAAAGAACCCAATCAATGATGCCAATCGCAGATGCAATTGCAAAAAGAAACAATGCCTGAAGTTCTACTGCAAATGCTTTAATTCTGGAAATCTTTGCAACGATTCTTGTTCGTGCAAAAATTGCATGAATACTGAAGCGAATAAGGATGGTGTGGAAGAGATAAAGAAGCACATACAGTGGCATAATCCAGACGCGTTTGATTCCAAGACTGGGGAAAGAAACCGAAACGGTTGCCATTGCAGCAAGGCATTGTGCTTCAATAAGTACTGTGGTTGCTTCCGTAATGGAGTTGCTTGCACTCTTAACTGTCTATGTCATGGTTGCAAGAATATATATGGAATCAAAGGCTCCTCTTCTGGCGCAAATGAACAAGAACCTGTTAAAGATTCTAATAGTGGCACCAAGAACGTGGAATTGGAAACCATGGATACTGCATCATCTTCTCAATCTCCTCATGCCAATTCCTCAACTCAGCTTTCTGAAAATTCAGATGATGGTGTGGATGATGAGATGGGCAACAGCAATGTGAATAATATCCATATGGCAATGCCATCAAATCAAGTTGCTTCTTCTGATTATGATTTTGCTGTTCATCAGGACCATGTTGATGCACCTTATTATGATCTGCCTCTAACCCTAGTGCAGATTCAGCGCAGCAGAAACGACTTTACCGAGCAGCAGAGTACTGACTTGTTTGGGGATTCCGATTGGCAGGGAGAATCATCTTTTCTGAACTCTCCTTCTGTCTATAGTGATGATAATGTTGCTGAGCTCTCATCAATTCCAAGGATTCAGAGTATTGAGAAGTATCAACCTCATGAGACTCATGGTTTTGATCAAGAGGTAGAAGCATCATTAGGTGCAATGACTCTCCAACATCCATTCCTTAGGAGTTCACGACAGACAAATAATGGTGATGCAACAAACATGCAATTGCTTCTTCATCCTCATCTTCATGGACATGGGCCATCTTCTGACATTGCTGATTATGAAGAGAACAGCTACCATAGTTAG 1062 0.4143 MNEGASDNNPADLNNEKNPINDANRRCNCKKKQCLKFYCKCFNSGNLCNDSCSCKNCMNTEANKDGVEEIKKHIQWHNPDAFDSKTGERNRNGCHCSKALCFNKYCGCFRNGVACTLNCLCHGCKNIYGIKGSSSGANEQEPVKDSNSGTKNVELETMDTASSSQSPHANSSTQLSENSDDGVDDEMGNSNVNNIHMAMPSNQVASSDYDFAVHQDHVDAPYYDLPLTLVQIQRSRNDFTEQQSTDLFGDSDWQGESSFLNSPSVYSDDNVAELSSIPRIQSIEKYQPHETHGFDQEVEASLGAMTLQHPFLRSSRQTNNGDATNMQLLLHPHLHGHGPSSDIADYEENSYHS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc39g00005 353 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 92 126 IPR005172 -
Stsc39g00005 353 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 25 60 IPR005172 -
Stsc39g00005 353 ProSiteProfiles CRC domain profile. 23 129 IPR005172 -
Stsc39g00005 353 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 22 85 IPR044522 GO:0003700
Stsc39g00005 353 MobiDBLite consensus disorder prediction 331 353 - -
Stsc39g00005 353 SMART CXC_2 22 63 IPR033467 -
Stsc39g00005 353 SMART CXC_2 89 130 IPR033467 -
Stsc39g00005 353 MobiDBLite consensus disorder prediction 338 353 - -
Stsc39g00005 353 MobiDBLite consensus disorder prediction 157 194 - -
Stsc39g00005 353 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc39g00005 Stsc-Chr39 23501 24737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc39g00005 25 181 CPP Transcription Factor Family AT3G22760 38.333 9.70e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc39g00005 TCR 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc39g00005 - K21776 ahf:112771246 149.443