Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc39g00004 ATGGCGAGTAGCAGTGGCAACATGAACGAAGAAGAAGGAGCTTCGGATAATAATCCTGGAGATCTCAACAAGGAAATGAATCCATCATCATCATCCATCAATGATGGCAATCGCGGATGCACCTGCAAAAAGACTCAATGCCTGAAGCTCTACTGCAAATGCTTTAATTCTGGAAATTTTTGCAACGATTCTTGTTCGTGCAGAAATTGCTTGAATAATGAAAAGAATAAGGATCGTGTGGAAGAGATAAAGAAGAACATACTGTGGCGTGATCCAGAAGCGTTTGAATCCAAGATTGGAGCAAGAAACCGAACCGGTTGCCATTGCTACAAGGCAGAGTGCATGAAGAATCACTGTGGTTGCTTCCGTAACAGAGTTGCTTGCTCCCTTATCTGTCTATGTCAGGGTTGCAAGAATAAATATGGAATCAAAGGCTCCTCTTCTGGTGCAAAGGAACAAGAACCTGTTAAAGATTCTAATAGTGGCAGCAAGAACGTGGAAACCATGGATACTGGATCATCTTCTCAATCTCCTCACGCCAATTCCTCAACTCAGCTTTCTGAAAATTCAGATGCCGGTATGGATGATGAAATGGGCAACAGCAATGTGAATAATATCCCTATGTCAATGCCGTCAAATCAAGTTGCTTCTCCTGATTATGATTTTTCTGTTCATCAGAACCATGTTGATGCACCTTATTATGATCTGAGCAGAAACAACATTACTGAAGAGCAGAGTACTAATTTGTTTGGGGATCAGGATTGGCAGGGACAATCATCTTTTCTGAGCTCTCCTCTTGTCTATGATGATAATGTTACTGAGCTCTCATCAATTCCAAGGATTCAGAGTAGTCAGCAGTATCAACCTCATCAGAGTCATGGTTTTCATCAACAGGTAGAAGCATCATTTGGTGCAATGACTCTCCAACATCCATTCCTGAGGAGTTCACAACAGCCAAATAATGGTGATGCAACAAACATGCAATTACTTCTTCATCCTCATCTTCATGGACATGGGCCATCTTCTACCATTGCTGATTATGAAGAGAACAGCTACCATAGTTAG 1065 0.416 MASSSGNMNEEEGASDNNPGDLNKEMNPSSSSINDGNRGCTCKKTQCLKLYCKCFNSGNFCNDSCSCRNCLNNEKNKDRVEEIKKNILWRDPEAFESKIGARNRTGCHCYKAECMKNHCGCFRNRVACSLICLCQGCKNKYGIKGSSSGAKEQEPVKDSNSGSKNVETMDTGSSSQSPHANSSTQLSENSDAGMDDEMGNSNVNNIPMSMPSNQVASPDYDFSVHQNHVDAPYYDLSRNNITEEQSTNLFGDQDWQGQSSFLSSPLVYDDNVTELSSIPRIQSSQQYQPHQSHGFHQQVEASFGAMTLQHPFLRSSQQPNNGDATNMQLLLHPHLHGHGPSSTIADYEENSYHS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc39g00004 354 MobiDBLite consensus disorder prediction 332 354 - -
Stsc39g00004 354 MobiDBLite consensus disorder prediction 145 220 - -
Stsc39g00004 354 MobiDBLite consensus disorder prediction 152 220 - -
Stsc39g00004 354 MobiDBLite consensus disorder prediction 1 36 - -
Stsc39g00004 354 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 38 74 IPR005172 -
Stsc39g00004 354 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 105 140 IPR005172 -
Stsc39g00004 354 SMART CXC_2 35 76 IPR033467 -
Stsc39g00004 354 SMART CXC_2 102 143 IPR033467 -
Stsc39g00004 354 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 12 99 IPR044522 GO:0003700
Stsc39g00004 354 ProSiteProfiles CRC domain profile. 36 142 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc39g00004 Stsc-Chr39 18277 19518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc39g00004 38 178 CPP Transcription Factor Family AT3G22760 35.976 3.06e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc39g00004 TCR 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc39g00004 - K21776 ahf:112771246 165.236