Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc39g00003 ATGGGGTGCGTTAATGGTAAACTAGATTCCCCCGTTCATCATCGGAGTAATTTACACAGGTTGAAAAAGGAAAACGCTTACAGCAACCCCAAACGAGCTTTATCTTCTTCTGCATCAACTATCAAACCAAGAAGCAATCGTGATTATAGTTCTAATAAGATAGCGAGAGGTAGTCGCCCTGATGATGATCGCAATAAGTCAAGGGTTGATGGTTGTGGATACAGGGATAATAAAGAAAAGAAAAAGGAAAAACAAAAAGAAGAGAAAAATAAAATAGAAAAATGTATAGCTATTAATGATATTGGTGAGTTAATTGAGGAAGAATCTAAGATATCTGAAGATAGTAAAATGAAGAAGAATAAGATTGCTGGTTATGAATTTGTTGAAGGTTGGCCCAAGTGGTTGGTTGATAATATCCCGAAAGAGGTTTTGTCTGCTTTAGTAGCCAAGAGCGCTGACTCCTACGAAAAACTTGACAAAGTTGGACGTGGAACATATAGCAATGTCTACAAAGCCCGTGACAAGGATACTGGAAAGATTGTTGCCTTGAAGAAGGTTCGTTTTGACACGTCTGATTCTGAGAGTATAAAGTTTATGGCCAGAGAAATTATGATACTACAGAAACTAGATCATCCCAATGTCATCAAGCTTAGAGGATTGGCAACATCAAGGATGCAGTATAGTCTTTATCTAGTCTTTGATTATATGCAATGTGATCTTTCCAGAATCATTTCTCGCCCAGATGAAAGACTCACTGAGTCTCAGATTAAGTGTTATATGCAACAATTGCTTGCTGGACTCCAACATTGCCATGAGAGAGGAATTATTCACCGAGATATTAAATCTTCCAATTTGCTAATAGATAGAAGAGGTTCTCTAAAAATAGCAGATTTTGGACTCGCAAATGTTAAACATCAAGACCCTCTTACAAATCGAGTGGTGACACTTTGGTATAGAGCTCCGGAACTCCTTTTAGGTTCAACTGATTATGGATACGACATTGATCTTTGGAGTGCTGGATGCTTATTAGCTGAGATGTTTGTTGGAAGACCATTCATGCCAGGAAGGACAGAGGTTGAGCAGCTTCACCTGATATTCAAACTATGTGGGTCCCCTCCGGATGATTATTGGATAAAAATGAAGCTAAGATCAAGCTACTTACCCTCACAACATTACAAACCTAATTATGAAGACTACTTCCGAGGGTTTCCTTCCTCTTCAATGGATCTGCTGATCACACTTCTTCATCTTGATCCTGCATGTCGTGGCAGTGCTGCCTCTGCTCTTGAGAGTGAATTCTTCAAAACTAGTCCATTAGCCTGTGACCCTTCAGCCTTACCAGTAATCTACAAAGAAGAGGATGAACGCTCACATAAGAGACGCAAAAGACGCAAAGGTCATAACAACAAAGGGCAAGTATCTTCAAAACCAAGCACAAGTGGTGTAAATGTGGCAGAGAAGAACCAAACCGCTGAACATTCTTCAAAGGAACAGAAGATAATGCAAGTTGAAGAAAAGGGAAGTAGCATAAGCACATCTTTACAGCTGATGGAGGAAAAAAGCATGAATACATCAACATCAATGTCCCCAATTTTCCTTTCTACGGGAAGAAAATCTCCAAAAACGGAGGGTCATCCTAATGCTCTTAAGAACATCAAGAACTACACTCTCTTGCAGGCCTCTATCATTGATATCATGAATAGAAATGAAGGCAACGACCTTGGTCCATTGCGTAGGTCCTTTTCTGCATTGGAATTTCGCCTTGATCATCTTGAGAAGCTATCAAGTCTCTATGGACCAAACAAGAACTTAGGCCTTGGAATTTAA 1827 0.3957 MGCVNGKLDSPVHHRSNLHRLKKENAYSNPKRALSSSASTIKPRSNRDYSSNKIARGSRPDDDRNKSRVDGCGYRDNKEKKKEKQKEEKNKIEKCIAINDIGELIEEESKISEDSKMKKNKIAGYEFVEGWPKWLVDNIPKEVLSALVAKSADSYEKLDKVGRGTYSNVYKARDKDTGKIVALKKVRFDTSDSESIKFMAREIMILQKLDHPNVIKLRGLATSRMQYSLYLVFDYMQCDLSRIISRPDERLTESQIKCYMQQLLAGLQHCHERGIIHRDIKSSNLLIDRRGSLKIADFGLANVKHQDPLTNRVVTLWYRAPELLLGSTDYGYDIDLWSAGCLLAEMFVGRPFMPGRTEVEQLHLIFKLCGSPPDDYWIKMKLRSSYLPSQHYKPNYEDYFRGFPSSSMDLLITLLHLDPACRGSAASALESEFFKTSPLACDPSALPVIYKEEDERSHKRRKRRKGHNNKGQVSSKPSTSGVNVAEKNQTAEHSSKEQKIMQVEEKGSSISTSLQLMEEKSMNTSTSMSPIFLSTGRKSPKTEGHPNALKNIKNYTLLQASIIDIMNRNEGNDLGPLRRSFSALEFRLDHLEKLSSLYGPNKNLGLGI 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc39g00003 608 Gene3D Phosphorylase Kinase; domain 1 143 237 - -
Stsc39g00003 608 Pfam Protein kinase domain 155 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc39g00003 608 FunFam probable serine/threonine-protein kinase At1g54610 142 237 - -
Stsc39g00003 608 MobiDBLite consensus disorder prediction 452 545 - -
Stsc39g00003 608 SUPERFAMILY Protein kinase-like (PK-like) 150 440 IPR011009 -
Stsc39g00003 608 MobiDBLite consensus disorder prediction 471 489 - -
Stsc39g00003 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Stsc39g00003 608 Gene3D Transferase(Phosphotransferase) domain 1 238 475 - -
Stsc39g00003 608 ProSiteProfiles Protein kinase domain profile. 155 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc39g00003 608 MobiDBLite consensus disorder prediction 504 536 - -
Stsc39g00003 608 ProSitePatterns Protein kinases ATP-binding region signature. 161 184 IPR017441 GO:0005524
Stsc39g00003 608 MobiDBLite consensus disorder prediction 1 89 - -
Stsc39g00003 608 FunFam Putative serine/threonine-protein kinase 238 472 - -
Stsc39g00003 608 CDD STKc_CDK9_like 155 434 - -
Stsc39g00003 608 SMART serkin_6 155 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc39g00003 608 MobiDBLite consensus disorder prediction 29 53 - -
Stsc39g00003 608 PANTHER CELL DIVISION PROTEIN KINASE 153 439 - -
Stsc39g00003 608 Coils Coil 75 95 - -
Stsc39g00003 608 MobiDBLite consensus disorder prediction 54 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc39g00003 Stsc-Chr39 14834 17622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc39g00003 149 465 Core Cell Cycle Gene Families AT5G10270 46.154 3.28e-97 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc39g00003 Pkinase 5.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc39g00003 K08819 - gmx:102667260 674.085