Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc399g00011 ATGAAAAGTTTGAAGTCTCCTATGTTGTTGTCTTCATGGAACCTCACAAACAAAACAAGTCCATGCAATTGGAATGGCATCAAATGTAACAATGGTGGAAGTGTTGTGGAGATAAAGCTTCCAAATTCAGGCCTAGATGGAACCCTCAACAGGTTTGACTTCTCTTCTTTTCCTAATCTCACTACACTCAATCTCACAATGAACAACCTTGTTGGAAAAATCCCATCTGAGATAGCAAACTTAACAAATTTGCAAGTTCTTGATCTTAGTAGCAACAATTTCACATATCAAATGCCACCAGAAATAGGAAACCTCTTAGAGCTACAAGCTCTAATCCTCTCAAACAATTCACTGTTGCAACAAATTCCATATCAAGTTAGCAATTTGCAGAATCTAAGGATTCTTGAACTAGGTGGTAACTATCTAGAGAATCCTGACCCAAAATTCAAGGGCATGGCATCCATAACAGACCTTAACCTCACATATAACTCTCTCACAGAATTTCCACCGTTTGTTCTTGAATGCCCAAAGCTTGTATCTCTTGATCTTTCATTGAACACTATTGGGAAAATTCCAATTCAATTGTTCAACAGTCTCAAGAACCTAACAACCCTTGTCCTCACACAAAGCCAATTGGAGGGGCCAATTCCAACAGATATTAAGAGTCTTTCAAAGCTTAAACACTTAAGTCTTGGACTGAACCTGCTTAATGGTACAATACCAAAGGAGATAGGTCTATTGTCATCACTTGAGATTCTTGAATTGCATGAAAATCCCTTGCAAGGACCAATACCATCTTCAATTGGAAATCTTACAATGCTTCAGAGATTGGATCTTCATAGCTCAGGGATAAATTCTAGCATCCCAGATGAATTAGGCTTCTGCAGAAACCTTACTTTTATCTCTATGTCAGGAAATAGCCTCACAGGTTCCTTACCTCTTTCAATGGCTTCACTGACAAGAATCAAAGAGTTAGGACTATCTGATAATAGTTTATCTGGAGAACTTGATCCATCTCTTCTTTCTAGTTGGACAGAAATCAGATCCTTGCAACTCCAAAACAATGATCTGTCAGGAAAACTTCCTCCTGAGATTGGTTTGCTTCAAAATCTTACTCTCTTGTACCTATACTCCAACCATTTTTCTGGACCAATCCCACCAGAAATTGGAAACTTATCAAGCATAGAAGATCTTGAACTTTCCAACAACAGTTTCAATGGTTCTATACCATCAACCATTGGAAAGTTGAAGAGCCTCGCCGTGTTAACACTGGACACAAATCAACTCAGTGGAATCCTTCCTCCTGAAATAGGTGATTTGGAAAGCCTGCAATACCTGGACTTGAGTGAAAACAAGCTCACAGGATCTTTGCCCTCATCAATTGTCCGTTTGGAGAATCTCAATCTCCTTTATCTTCATGACAACCATTTCTCAGGAAGTATTCCACAAGATTTTGCACCTCCTTTGTTAAACAATTTGACCTTTGCTAACAATAGCTTCTCCGGGAAGCTACCTTCAGGAGTATGCAGGGGAGGGAATCTTGTCTACTTAGCGGCGAATCAGAACAATCTAGAAGGTCCAATCCCAGAAAGCTTGAGAAACTGCACTGGACTAATCAGAGTTCGTCTTGAGAAGAACTCTCTTAGAGGAGATATCACGAATGCATTCGGCATATACCCGGATTTGGACTTCATTGATTTAGGACACAATCAGCTTTCTGGTTTGTTGACAAGTAACTGGGGAGAGTGCAAAAGTCTCTCAAGTTTTAGCATATCTTCCAATAAGATACAAGGGAACATCCCTCCTGAGCTTGGAAGTTTGCCAAACTTACAAAATCTTGATCTCTCCAACAACAATCTAACAGGAAGCATCCCAGTGAAGGTCTTCAATCCATCTTCCAAGCTGCTTAAGCTGAACATGAGCAACAACAATCTCTCGGGTCAGATACCAACCAGCATTGGAGCACTTTCACAGCTGCAGGTTCTGGATTTATCAGAAAACAATCTGAGAGGGTCAATTCCAAAAGAACTTGGAAACTGCAGAAGGCTTATATCACTGAAGTTGAGTATGAACCAGTTAGATGGGAATATGCCGGTTGAGCTTGGGAATTTAGTGGAGTTGCAGCCTCTGTTGGATCTCAGCCATAACTCACTAAGTGGACAGATAATCCCACAGCTAGGAAATCTGATTGCCTTGGAAGTTTTGAACCTGTCCCATAATCAGCTTTCTGGGACAATTTCTTCTTCTTTGGAAGGACTAATAAGCCTTCAGTCAGTGGATATTTCCTATAACAAACTTGTAGGTCCCCTCCCAGACCTAGCTGCTTTTCAAAATGCTTCCTCTGAAGCTATAGTTGGCAATGCAGGTTTGTGTGATGGTACTGCTAGCAATAGCAAACCAATTTTGAGTCCTTGTGTTGGAAGCAAAAGCAGCAAATCAAACAAGCATAAGGTGATCATTGCAGTAGTCATTCCACTCGCTGTTTTAGTCATTCTATTTGTTTCCCTTGGAGTCTTCGCCTTGCTGCGCTACAAGAGAGTCGACCAAGAAGAAGAGGAGAAGAGTCAAGGTGGAAAGGACTCATTCTTTGTATGGAATCACAGGAGCATGGTAGAGTTTAAGGACATACGCAAGGCAACTGAGAACTTTGGTGACAAGTACTGCATAGGCATAGGAGGGCAGGGAAGTGTATACAAAGCAATGCTTCCAACAGGTGATATCTTTGCAGTGAAGCGTCTCCACCAGAATGAGGATATAGACTTCTCCGGACACCAGACAAAGAATTTCATGTCTGAAGTTCATGCATTAACCAATATTCGCCACCGCAACATTGTAACAATGTGTGGCTTTAGTTACTCGGACGGTTCAATATTTTTCATATATGAGCATGTGGAGAGAGGCTCTTTGCTGAAGTTGTTGCAGGACGACGAGGAGGCGAAGATGTTGACCTGGGACATCAGGCTGAACATAATAAAAGGATTAGCAAATGCATTGTCTTACTTGCACCATGACTGCAAGCCAAGCATTGTTCACAGAGACATAACAGGAAACAATGTTCTCTTGGACACTGATTATGAGCCTAAACTATCTGATTTTGGGACAGCAAGGTTGCTCCAAGAAGGAGAATCAAATTGGACAGCTCCTGCTGGATCATACGGCTATATAGCACCAGAGCTTGCATTTACCATGAAAGTGACAGAAAAATGTGATGTATATAGTTTCGGAATTGTTGCATTAGAGATTTTGGCAGGGAAGTACCCTCATGAACTGCTTTTGTGTCTAGAATCTGGGGGATTTGATCAACACCTTGTGGATTTCTTAGATAAGAGAATAGATCCTCCAACAAGAAATTCTATTCCACTCCTAGTATTGGTGGCAAGGATGATCCTAAAATGTGTTGACAAAGATCCTTTGGCAAGACCAACCATGCACCAAGTATCCCAAGAGCTTTCATCATCTGGTTTGTCATCCTCTGACCCATTGAGAATGATCAAATTGGAGAATTTACTAGACATGTAA 3519 0.4103 MKSLKSPMLLSSWNLTNKTSPCNWNGIKCNNGGSVVEIKLPNSGLDGTLNRFDFSSFPNLTTLNLTMNNLVGKIPSEIANLTNLQVLDLSSNNFTYQMPPEIGNLLELQALILSNNSLLQQIPYQVSNLQNLRILELGGNYLENPDPKFKGMASITDLNLTYNSLTEFPPFVLECPKLVSLDLSLNTIGKIPIQLFNSLKNLTTLVLTQSQLEGPIPTDIKSLSKLKHLSLGLNLLNGTIPKEIGLLSSLEILELHENPLQGPIPSSIGNLTMLQRLDLHSSGINSSIPDELGFCRNLTFISMSGNSLTGSLPLSMASLTRIKELGLSDNSLSGELDPSLLSSWTEIRSLQLQNNDLSGKLPPEIGLLQNLTLLYLYSNHFSGPIPPEIGNLSSIEDLELSNNSFNGSIPSTIGKLKSLAVLTLDTNQLSGILPPEIGDLESLQYLDLSENKLTGSLPSSIVRLENLNLLYLHDNHFSGSIPQDFAPPLLNNLTFANNSFSGKLPSGVCRGGNLVYLAANQNNLEGPIPESLRNCTGLIRVRLEKNSLRGDITNAFGIYPDLDFIDLGHNQLSGLLTSNWGECKSLSSFSISSNKIQGNIPPELGSLPNLQNLDLSNNNLTGSIPVKVFNPSSKLLKLNMSNNNLSGQIPTSIGALSQLQVLDLSENNLRGSIPKELGNCRRLISLKLSMNQLDGNMPVELGNLVELQPLLDLSHNSLSGQIIPQLGNLIALEVLNLSHNQLSGTISSSLEGLISLQSVDISYNKLVGPLPDLAAFQNASSEAIVGNAGLCDGTASNSKPILSPCVGSKSSKSNKHKVIIAVVIPLAVLVILFVSLGVFALLRYKRVDQEEEEKSQGGKDSFFVWNHRSMVEFKDIRKATENFGDKYCIGIGGQGSVYKAMLPTGDIFAVKRLHQNEDIDFSGHQTKNFMSEVHALTNIRHRNIVTMCGFSYSDGSIFFIYEHVERGSLLKLLQDDEEAKMLTWDIRLNIIKGLANALSYLHHDCKPSIVHRDITGNNVLLDTDYEPKLSDFGTARLLQEGESNWTAPAGSYGYIAPELAFTMKVTEKCDVYSFGIVALEILAGKYPHELLLCLESGGFDQHLVDFLDKRIDPPTRNSIPLLVLVARMILKCVDKDPLARPTMHQVSQELSSSGLSSSDPLRMIKLENLLDM 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc399g00011 1172 ProSiteProfiles Protein kinase domain profile. 883 1155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc399g00011 1172 Gene3D Ribonuclease Inhibitor 340 418 IPR032675 -
Stsc399g00011 1172 Gene3D Ribonuclease Inhibitor 419 487 IPR032675 -
Stsc399g00011 1172 SUPERFAMILY L domain-like 20 335 - -
Stsc399g00011 1172 Pfam Leucine Rich repeats (2 copies) 732 774 IPR025875 -
Stsc399g00011 1172 Pfam Leucine Rich repeats (2 copies) 58 93 IPR025875 -
Stsc399g00011 1172 FunFam Nuclear pore complex protein NUP107 2 148 - -
Stsc399g00011 1172 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 488 801 - -
Stsc399g00011 1172 SUPERFAMILY L domain-like 269 622 - -
Stsc399g00011 1172 ProSiteProfiles Leucine-rich repeat profile. 609 631 IPR001611 GO:0005515
Stsc399g00011 1172 SUPERFAMILY L domain-like 533 792 - -
Stsc399g00011 1172 Gene3D Ribonuclease Inhibitor 488 801 IPR032675 -
Stsc399g00011 1172 PANTHER LEUCINE RICH REPEAT KINASE 2 490 1154 - -
Stsc399g00011 1172 FunFam Leucine-rich repeat receptor protein kinase MSP1 846 963 - -
Stsc399g00011 1172 FunFam Receptor-like protein kinase 7 168 412 - -
Stsc399g00011 1172 SUPERFAMILY Protein kinase-like (PK-like) 862 1150 IPR011009 -
Stsc399g00011 1172 FunFam Os07g0541700 protein 964 1049 - -
Stsc399g00011 1172 Pfam Leucine rich repeat 608 669 IPR001611 GO:0005515
Stsc399g00011 1172 Pfam Leucine rich repeat 418 477 IPR001611 GO:0005515
Stsc399g00011 1172 Gene3D Phosphorylase Kinase; domain 1 844 963 - -
Stsc399g00011 1172 Pfam Protein kinase domain 888 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc399g00011 1172 SMART LRR_sd22_2 129 154 - -
Stsc399g00011 1172 SMART LRR_sd22_2 729 752 - -
Stsc399g00011 1172 SMART LRR_sd22_2 81 107 - -
Stsc399g00011 1172 SMART LRR_sd22_2 656 677 - -
Stsc399g00011 1172 SMART LRR_sd22_2 440 469 - -
Stsc399g00011 1172 SMART LRR_sd22_2 247 273 - -
Stsc399g00011 1172 SMART LRR_sd22_2 368 400 - -
Stsc399g00011 1172 SMART LRR_sd22_2 607 628 - -
Stsc399g00011 1172 FunFam Leucine-rich repeat receptor protein kinase EMS1 413 487 - -
Stsc399g00011 1172 Gene3D Transferase(Phosphotransferase) domain 1 964 1159 - -
Stsc399g00011 1172 Gene3D Ribonuclease Inhibitor 2 149 IPR032675 -
Stsc399g00011 1172 SMART LRR_typ_2 607 631 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 416 439 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 81 105 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 464 487 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 176 198 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 368 392 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 152 175 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 440 463 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 656 680 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 271 295 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 129 151 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 729 753 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 319 343 IPR003591 -
Stsc399g00011 1172 SMART LRR_typ_2 223 247 IPR003591 -
Stsc399g00011 1172 PRINTS Leucine-rich repeat signature 443 456 - -
Stsc399g00011 1172 PRINTS Leucine-rich repeat signature 607 620 - -
Stsc399g00011 1172 Pfam Leucine rich repeat N-terminal domain 3 30 IPR013210 -
Stsc399g00011 1172 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1009 1021 IPR008266 GO:0004672|GO:0006468
Stsc399g00011 1172 Gene3D Ribonuclease Inhibitor 150 265 IPR032675 -
Stsc399g00011 1172 Gene3D Ribonuclease Inhibitor 266 339 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc399g00011 Stsc-Chr399 40273 44050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc399g00011 10 625 Receptor kinase-like Gene Family AT4G08850 35.370 1.07e-88 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc399g00011 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc399g00011 - - ccaj:109803789 1571.6