Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc399g00006 ATGGATGGTTCTAGAACTTCAAGCATCAGCGGCAACAAGAGTAACAAGACCAAGCTGCTTAATCCATGGATGCTCCATTTCCAGAAGCTCGCTCTTGAACTCAAGTGCCCTCTCTGTTTGAGCTTGTTCAAGAGGCCAGTTTTGCTACCCTGCAACCACTTGTTCTGCAATTCGTGTTTGGCGGATTTCACAGCGTCTGGTTCTGAATGTGTTGTTTGTAATGCTAAGTATGCTCAATCAGATATAAGGCATGTGCCTTTTGTGGAAAACGTGGTAGGGATCTATAGGAGTTTGGATGCCACCTTTTCTGCTAGTTTGTTTCAGCAACATTCTTCTGATGTGAGGGTTTTGGAGCCGTGTCAAGGGTTACAAAATTCAGTTCACAAGAGCAAAAACACTAATATTGTTGGGGTTGGGAAGAATCAGAAGCTAAAGATGAGTGGCATTGCAGTGCGTGATAAGGGTGAGGATATCGAGATGTATTCCGGAGGGCAGGTTGAGAATCCAATGCGGTGTTCCCAGATGAAAACTGGGGTTCGTGAAGACTCTGGAGTTGTTGAAATGGATGTCAATCAAGGGACACAATCAGCACCGGATAGTCCACCATTTTGTGACACCAAGGGTTCAGAGAATGACTGCAGTGATCAAGATAGTGAGCATCTTTTGCCTTCAGGGAGATTGGAAAATTCCTCATTGAAGAGAGCAAGTACGAGAACTGGAAATTTGAAGGAAAGAATGACACAACTGAGGTCTGAAAGTTCAGGCTCTGAAACAGAGGGTCTTACAAGAGAGCTCAAGAGGCAGAAAAATCTTACCCATGGAAATGATCAACATAGAACTGAAAAGGACCATGGTGCAGTGATGACTGCAAATGTAGATGACTCTTATACAAGTACATGCTCATTTTGCCAATCCTCAAAAATCTCAGAGGCTACTGGGCCGATGCTGCATTGCGCAAATGGGAATTTGGTTACTGGTGATGCAGCAAAGCAACCAAATGTCATACATGTGCACAAAGCTTGCAGTGATTGGGCACCACAAGTTTACTTTGTTGGTGAATCTGTTAAGAATTTGAAGGCAGAACTGGCAAGGGGATCAAAGCTTAAATGCAGCAAATGTGGTTTAAAGGGAGCTGCACTTGGCTGCTTTGTCAAATCCTGCAGAAGGACCTATCATGCTCCTTGTGCAATGGAGGTCTCAAAGTGCCGTTGGGATTATGTACTTCTCTTCCTTGTTAAATACTAA 1245 0.4394 MDGSRTSSISGNKSNKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADFTASGSECVVCNAKYAQSDIRHVPFVENVVGIYRSLDATFSASLFQQHSSDVRVLEPCQGLQNSVHKSKNTNIVGVGKNQKLKMSGIAVRDKGEDIEMYSGGQVENPMRCSQMKTGVREDSGVVEMDVNQGTQSAPDSPPFCDTKGSENDCSDQDSEHLLPSGRLENSSLKRASTRTGNLKERMTQLRSESSGSETEGLTRELKRQKNLTHGNDQHRTEKDHGAVMTANVDDSYTSTCSFCQSSKISEATGPMLHCANGNLVTGDAAKQPNVIHVHKACSDWAPQVYFVGESVKNLKAELARGSKLKCSKCGLKGAALGCFVKSCRRTYHAPCAMEVSKCRWDYVLLFLVKY 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc399g00006 414 ProSiteProfiles Extended PHD (ePHD) domain profile. 297 414 IPR034732 -
Stsc399g00006 414 ProSiteProfiles Zinc finger RING-type profile. 36 74 IPR001841 -
Stsc399g00006 414 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 226 405 IPR031099 GO:0006281|GO:0006974
Stsc399g00006 414 MobiDBLite consensus disorder prediction 191 282 - -
Stsc399g00006 414 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Stsc399g00006 414 Pfam PHD-like zinc-binding domain 338 399 - -
Stsc399g00006 414 Pfam Zinc finger, C3HC4 type (RING finger) 33 77 - -
Stsc399g00006 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 407 IPR013083 -
Stsc399g00006 414 SMART ring_2 36 73 IPR001841 -
Stsc399g00006 414 SUPERFAMILY RING/U-box 33 96 - -
Stsc399g00006 414 MobiDBLite consensus disorder prediction 223 256 - -
Stsc399g00006 414 Coils Coil 232 252 - -
Stsc399g00006 414 FunFam Breast cancer associated RING 1 21 106 - -
Stsc399g00006 414 MobiDBLite consensus disorder prediction 257 282 - -
Stsc399g00006 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 106 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc399g00006 Stsc-Chr399 22393 24669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc399g00006 2 85 C3H Transcription Factor Family AT3G07200 27.381 6.49e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc399g00006 K10683 - gmx:100784883 542.347