Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc399g00003 ATGGGGAACGGAAATAGGCAGGGGAGGAGGAAGAAGAGGAGGAGTAGTTTGAAGAACATGATGCAGTGCCTCTGCTCAGGGGAGCAGTTGAGACGAGCCGGAGGCATGGATGAGATGGCGGTTCCTTCGTCGTCGGATTCTCTTGCCACCAAGGACTATTATTCGGCCACCACCGGGAGTGGGCGTTCTGGCCAGGATGGACAACTTCAGAGGAGGCTAGATGCAGGAAATATCGAAGAAGCTGAGTCGTCGTTGCGTGAGGCTGGCTGCTTGAATTATGAGGAAGCTAGAGCTTTGTTAGGAAGATATGAATATCAGAAAGGGAATATAGAAGCTGCTTTACATGTTTTTGAAGGAATAAATATAGACACTGTGACTCCAGAGATAAAAATTTCTCTTGCCAGAATAAAACAAAACCATAGGAGACATTCCAAGAATTATGTTCCACCGCCTATGTCTGTACATACAGTTGGCACACTGTTTGAAGCAGTTTTCCTTAAAGCTAAATGTTTGCAGGCTCTGGGAAGGTTGAAAGAAGCTGCCCAATCTTGCAAAGTTATTCTGGACATAGTTGACTCTTCATTGCCTGAAGGTTTGTGTAAAAGCCTTGGTGCTGAATGTAAATTGCAGGACACTGTGACTAAGGCAGTTGAGCTACTTCCAGAATTATGGAAACTTGCTGATTGTCCACGTGAAGTTATAATGGCTTACCGACAGGCGCTCCTACGTCGGTGGAATCTTGCTGCCGAGACCATAGCAAAGATTCAGAAAGAATTTGCTTCTTTTCTTCTTTATAGTGGAGGGGAAGTAATCCCCCCAGATCTCCGTTCACAAAAGGAAAACTCATTTGTTCCCAGGAACAACATAGAAGAGGCTATACTAATTTTAATGATTTTGTTGAGAAAAGTCTCTTTGAATGAAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTATCAGTTTCAGGGGATTTAACAGCTTTAGCCAGTCAATGGGAAGAATTGCTTCCTGGGACTATTAATAGAAGAGAAAGGTATTATGCCCTTGCTCTTTGTTATTGTGGTGCTGGTCAAGACCTGGTAGCACTGAATCTTCTTAAAATATTGTTGAGTAGCAATGAAGATCCAAAACATGTTCCAGCTTTGTTAATGGCTTCTAACCTTTGTTGCAAGAACCCCAATCTTGCAGAAGATGGGGTCAACTATGCTCGTCGAGTGCTAGAGAACTTGAATGGAAGATGTGACCAATTGGAAAGTCGTGCAAATTGCTTACTTGGTATTTCACTTTCAGCACACTCAAAAATAGCTGTTTCTGATTCTGAGAGGTTTGGGAGACAATCCGAGGCACTTCGGTTTCTGGAAACTGCAAGGAGAATGACTAGAATGAGAGACCCGCTTATATTGTACTATCTCAGTTTAGAATATGCAGATCAAAGGGAGTTGGATTCTGCACTTCATTATGCAGAGTGCTTTCTGGAACTTGAAGCTATGTCTAGTATTAAAGGGTGGCTGTTGTTAGCCCGGATATTATCAGCTCAAAAACGGTTTTCGGATGCTGAATCTATTGTTAATGCTGCTTTGGATCAGACTCCAAAATGGGATCAAGGAGAACTGTTGCGAACAAAAGCTAAACTGCAAATTGCACAGGGTCAGTTAAGGAGTGCCTTTGACACATATATTCATCTTCTTTCTATTCTTCATATTCAGCGGAAAACTTTTGGTCAATGGAAGAAGCTATGTAAGGATTCTAGAGATCGTGCTTGGAACTTGGAACTGGAATTATGGCATGATCTTGCTTATATCTATATATCTCTGTCATGTTGGCATGATGCAGAGNNNNNNNNNNCCTTTCAAGATCTAAAGCCATAA 1878 0.4201 MGNGNRQGRRKKRRSSLKNMMQCLCSGEQLRRAGGMDEMAVPSSSDSLATKDYYSATTGSGRSGQDGQLQRRLDAGNIEEAESSLREAGCLNYEEARALLGRYEYQKGNIEAALHVFEGINIDTVTPEIKISLARIKQNHRRHSKNYVPPPMSVHTVGTLFEAVFLKAKCLQALGRLKEAAQSCKVILDIVDSSLPEGLCKSLGAECKLQDTVTKAVELLPELWKLADCPREVIMAYRQALLRRWNLAAETIAKIQKEFASFLLYSGGEVIPPDLRSQKENSFVPRNNIEEAILILMILLRKVSLNEIEWDPSILDHLSFALSVSGDLTALASQWEELLPGTINRRERYYALALCYCGAGQDLVALNLLKILLSSNEDPKHVPALLMASNLCCKNPNLAEDGVNYARRVLENLNGRCDQLESRANCLLGISLSAHSKIAVSDSERFGRQSEALRFLETARRMTRMRDPLILYYLSLEYADQRELDSALHYAECFLELEAMSSIKGWLLLARILSAQKRFSDAESIVNAALDQTPKWDQGELLRTKAKLQIAQGQLRSAFDTYIHLLSILHIQRKTFGQWKKLCKDSRDRAWNLELELWHDLAYIYISLSCWHDAEXXXXFQDLKP 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc399g00003 625 MobiDBLite consensus disorder prediction 51 67 - -
Stsc399g00003 625 SUPERFAMILY TPR-like 446 615 IPR011990 GO:0005515
Stsc399g00003 625 Gene3D Tetratricopeptide repeat domain 441 617 IPR011990 GO:0005515
Stsc399g00003 625 Pfam Tetratricopeptide repeat 476 534 - -
Stsc399g00003 625 Coils Coil 403 423 - -
Stsc399g00003 625 Gene3D Tetratricopeptide repeat domain 28 433 IPR011990 GO:0005515
Stsc399g00003 625 MobiDBLite consensus disorder prediction 51 76 - -
Stsc399g00003 625 SUPERFAMILY TPR-like 161 381 IPR011990 GO:0005515
Stsc399g00003 625 PANTHER PROTEIN NPG1 21 616 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc399g00003 Stsc-Chr399 5299 9282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc399g00003 10 615 Calmodulin-binding Proteins AT4G28600 55.357 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc399g00003 K21843 - gmx:100800762 813.913