Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc398g00006 ATGTATGTCTTTGCAGTTAGAGAAGCAGAACAACTAGATTGGGGAATGAGAGTGAGGATAGCTATGGGGATAGCCTATTGCCTAGAACACTTGCATCAACTGACACCGCCCGTCGCCCATAGAGACCTGATCTCTTCCGCTATATACCTGACCGAAGACTACGCGGCCAAATTATCAGACCTTAGTTTCTGGAACAACACACAAGGTTCTAAAGCCATGCAGCTCTCTGAAACAACTTGGACTAATATAAAGGACAATGTCTATAGCTTTGGAATGATCCTTTTCGAATTGATAACCGGTAGGGTTCCCTATGCCGTGGAGAATGGCTATCGTGTGGATTGGACGGCGGAGTATATAAGGAGGCAGCCCATGAAGGATATGGTGGATACAAGGCTGAACAATTTGAAAGAAAGTGAAGTTGAGAAATGGTGTCAAGTTATTAACAGTTGTGTTCATCCAAATGCAGAGAAAAGACCAAATATGAGAGAGGTTGTTGCTAAGCTGAAGGAAATAACTGCTATGGAGCTTGATGGAGCAACTCCAAAATCATCTCCACTATGGTGGGCAGAATTAGAAATTATGGATGCAAATTCAGACATTAATCCATGA 609 0.4286 MYVFAVREAEQLDWGMRVRIAMGIAYCLEHLHQLTPPVAHRDLISSAIYLTEDYAAKLSDLSFWNNTQGSKAMQLSETTWTNIKDNVYSFGMILFELITGRVPYAVENGYRVDWTAEYIRRQPMKDMVDTRLNNLKESEVEKWCQVINSCVHPNAEKRPNMREVVAKLKEITAMELDGATPKSSPLWWAELEIMDANSDINP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc398g00006 202 ProSiteProfiles Protein kinase domain profile. 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc398g00006 202 PANTHER PROTEIN MALE DISCOVERER 2 6 195 - -
Stsc398g00006 202 Gene3D Transferase(Phosphotransferase) domain 1 2 180 - -
Stsc398g00006 202 SUPERFAMILY Protein kinase-like (PK-like) 10 168 IPR011009 -
Stsc398g00006 202 Pfam Protein tyrosine and serine/threonine kinase 9 168 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc398g00006 Stsc-Chr398 45589 46197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc398g00006 14 171 Receptor kinase-like Gene Family AT4G31110 35.135 5.43e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Stsc398g00006 PK_Tyr_Ser-Thr 6.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc398g00006 - - lja:Lj0g3v0089589.1 293.508