Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc397g00005 ATGGTGGAAGGGAGAGTTCGGTTATCTAAGGAAGCTAGAAATGGGTTAGAAATTTTGAAGCATAAAAGGCTTCAGCGGGCAAAGGCTTCAACTGACACAAGTGTAGCAAACATGATGAACAGAAGTGGAGGAGATGCTCTAAGAGCATCAGCATCATGTGGTGTGAGATTGCATGGTAATGCAGATGCCTTTTCCAAGCGCAAGGTGGATAAGTTTGACACAAGTAATCTTGATTGGATTGATAAAATTCCAGAGTGCCCTGTGTATTCTCCAACAAAAGATGAATTTGAGGATCCTTTGGTTTATTTACAAAAGATAGCTCCTGAAGCTTCTAAATATGGTATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCTGGAGTTGTTTTAATGAAGGAGAAAGCCGGATTCAAGTTTACAACTAGAGTGCAGCCCCTTCGCCTTGCTGAATGGGATACTGAGGACAAAGTTACCTTTTTTATGAGTGGCAGAAATTATACATTTAGGGATTTTGAGAAAACAGCAAACAAGGTTTTTGCACGAAGATATTGCAGCTCTGGATGTCTTCCTGCCTCCTACTTGGAGAAAGAGTTCTGGCAAGAAATTGGTTGCGGGAATATGGAAACAGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTCTCATCTTCTCCTTCTGATCAGCTTAGTAGAAGCAAGTGGAACTTGAAGAAACTTTCCCGGTTGCCTAAATCTACTTTGCGGCTCTTGGAATCATCAATTCCAGGAGTAACGGAACCCATGTTGTACATTGGAATGCTTTTTAGTATGTTTGCTTGGCATGTTGAGGATCATTATTTGTACAGCATTAATTATCATCACTGTGGAGCATCAAAAACATGGTATGGTATTCCAGGTCATGCAGCATTGGATTTTGAAAGGGTTGTGAGAGAACATGTGTATACTAATGATATTTTATCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCCTTGGGAAAACAACACTATTTCCGCCAAATATTTTGTTGGAACATGAAGTCCCAGTTTACAAGGCTGTTCAAAAGCCTGGGGAGTTTGTGATAACCTTCCCTAGGGCATACCATGCCGGCTTCAGTCATGGTTTCAACTGCGGAGAAGCTGTGAATTTTGCAATTGGTGATTGGTTTCCATTAGGAGCTATTGCCAGCCGGAGATATGCACTGCTTAATAGGATTCCGTTGCTTCCCCATGAAGAACTTCTATGCAAAGAAGCCATGCTTCTGTATGCATCTTTGGAGCTTGAAGATTCAGACATCTCTACAGGCTTGCCATACCAGCATTCTATTAAGGTTTCTTTTGTTAATTTGATGCGTTTCCAGCATTGTGCACGTTGGTTCCTAATGAAATCAAGAGCATGTATAAGTGTCTCTTCTCATTCCCATGGCGCAATTCTCTGTAGCGTCTGCAAACGTGACTGTTATGTAGCTTTTGTTGACTGCCACTGTCACCTGCATCCAGTATGCCTACGACACGATATTGAATCCCTTGACTTAACTTGTGGGAGCAAATACACACTTTTCGTGAGGGAGGATATCACAGATATGGAAGCTGCAGCGAAGTATTTTGAGCAGGAAGATGGGATAGTTTCGCAAACCCGAAGTGACCAAAACATGTATTCCTATCCGTTGTCAAATATGTTTTGGAAAGCTGAGGCAAATGGATACGTACCGTATTGTGATCTGAAACTTGATTCTGTTGTTGAATTTTATACAACTCCAGAGCAGACAACAAATAATCAAGAATGTGGTACACAAAGTCAATTTGTTTCCAGACCTAGTTTGGAGTATTGTATGCCAGAAGCGCCTGAGGCTGCAACCACTCTTTGTTCTCTTTCAGAACCTCTTGAATCCTCCTCTGCAATAAAAAATGCTGAGGGGCATGTGAGCTTGAAGCTACAAAGCGGTGCTTTTGAAGAGGAAGGTGGTGAAAGAACATTTAAGAATGAACGTGAATCTTCCCCATCCCCTGGTCAGTATCATGAAAGCTCATGTAAACCACAGGGTGATCTTCATAGGTCTGACGCAAAGCCCATTGTGGATAATGAGAGTGATGATTCTGATTCGGAGATGTTCAGGGTAAAGCGGCCTTCTTCACTGAAAGCAGAGAGGAGAAGTGCAAATGATGCTTTGTCTCTGAAGTATTCTGAGCAGCAGGGACTGAAACGATTGAAGAAAGTCCTTCCCGAAGGAAGAAGTGGGCAACCAACGGAATCAATGAGAAGCAGTGAATCAAGTCAAAAATCCAGTCAGGCTTTTCGTAAAGTTGATGGTGAAATTTCGTCAAGGGAGAGATTCACAGGGGCAAACAACAACATTCCCATTTCTGTAAGATATAAGAAGTTTGGTAATGACGTGATAAGTAGGCAACGAGATCACTACCGGAAAGATAAGGTGCAGCAGACTATTAGGGAACCGCCTTCCATTGAGATCGGAGCAAAGCGGCTTAAAGTCCGAGGCCCCTCATTTTTAAGTTTAGAAAGCAGACTGAATTGA 2541 0.4219 MVEGRVRLSKEARNGLEILKHKRLQRAKASTDTSVANMMNRSGGDALRASASCGVRLHGNADAFSKRKVDKFDTSNLDWIDKIPECPVYSPTKDEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKTANKVFARRYCSSGCLPASYLEKEFWQEIGCGNMETVEYACDVDGSAFSSSPSDQLSRSKWNLKKLSRLPKSTLRLLESSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALDFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRIPLLPHEELLCKEAMLLYASLELEDSDISTGLPYQHSIKVSFVNLMRFQHCARWFLMKSRACISVSSHSHGAILCSVCKRDCYVAFVDCHCHLHPVCLRHDIESLDLTCGSKYTLFVREDITDMEAAAKYFEQEDGIVSQTRSDQNMYSYPLSNMFWKAEANGYVPYCDLKLDSVVEFYTTPEQTTNNQECGTQSQFVSRPSLEYCMPEAPEAATTLCSLSEPLESSSAIKNAEGHVSLKLQSGAFEEEGGERTFKNERESSPSPGQYHESSCKPQGDLHRSDAKPIVDNESDDSDSEMFRVKRPSSLKAERRSANDALSLKYSEQQGLKRLKKVLPEGRSGQPTESMRSSESSQKSSQAFRKVDGEISSRERFTGANNNIPISVRYKKFGNDVISRQRDHYRKDKVQQTIREPPSIEIGAKRLKVRGPSFLSLESRLN 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc397g00005 846 Pfam JmjC domain, hydroxylase 263 386 IPR003347 -
Stsc397g00005 846 Pfam jmjN domain 87 119 IPR003349 -
Stsc397g00005 846 FunFam Lysine-specific demethylase isoform A 81 430 - -
Stsc397g00005 846 SMART JmjN_1 85 126 IPR003349 -
Stsc397g00005 846 MobiDBLite consensus disorder prediction 750 771 - -
Stsc397g00005 846 Gene3D Cupin 86 439 - -
Stsc397g00005 846 SMART cupin_9 230 403 IPR003347 -
Stsc397g00005 846 ProSiteProfiles JmjC domain profile. 230 403 IPR003347 -
Stsc397g00005 846 PANTHER LYSINE-SPECIFIC DEMETHYLASE 79 817 - -
Stsc397g00005 846 Pfam C5HC2 zinc finger 482 533 IPR004198 -
Stsc397g00005 846 SUPERFAMILY Clavaminate synthase-like 164 419 - -
Stsc397g00005 846 MobiDBLite consensus disorder prediction 681 725 - -
Stsc397g00005 846 MobiDBLite consensus disorder prediction 653 785 - -
Stsc397g00005 846 ProSiteProfiles JmjN domain profile. 86 127 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc397g00005 Stsc-Chr397 37561 43726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc397g00005 54 541 JUMONJI Transcription Factor Family AT2G34880 31.560 7.39e-64 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc397g00005 JmjC 2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc397g00005 - - gmx:100798611 1309.28