Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc397g00003 ATGCAAAACAACAGCTTCGCCTTCATGCCCACCATGCATTTTCATCACTCTTTTCCTTCCATGAAGGAAGAGGATGGGATCTTGAAAGGGAAGGAAGAGATCATGGAGAGTGGTTCAGGGAGTGAACAAGTTGAAGACAAGTCAGGGAATGAGCAAGAAACTGATCAACAACAGCCTCAGAATAAGAAGAAACGTTACCACAGGCACACTGCACGCCAGATCCAAGAGATGGAAGCCTTGTTCAAGGAATGTCAACACCCGGATGATAAGCAAAGGCTCAAACTTAGCCATGAACTTGGCCTGAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGAACCCAGATGAAGGCACAACAAGATCGGGCTGAAAATGTGATACTAAGAGCAGAGAATGAGACTCTCAAGAATGAGAATTATCGTCTACAAGCTTCGCTGCGTAGTGTTATATGTCCCAATTGTGGTGGTCCAGGAATAATGGGAGCTGATCTGGGCTTGGATGAACAACAACTTCGCATTGAAAATGCGAGGTTAAGAGAGGAGTTGGAACGTGTGTGTTGCCTCACTTCAAGATACAGCGGGCGTCCAATCCAAACAATGGCGCCACCACCTGCACTCATGCCTCCATCACTCGACTTGGACATGAACATCTACCCAAGGCATCACTATGTCGATCCCAACATTCCTCCATGCACAGAGATGATTCCGGTCCCAATGTTGCCCCCGGAACCTACTCAGTTCCCGGAGGGCGGTCTCTTAATGGAAGAGGAGAAGTCTCTGGCCATGGAGCTTGCCGCCTCTTCCATGGCCGAGCTAGTCAAGATGTGCCATTCTAACGAGCCGCTTTGGATCCGCGGCTCAGACGGCGATAGGGAAGTTCTTAACTTTGAGGAGCATGGGAGGCTGTTCCCATGGCCTTTGAATCCCAAGCACCGTACTGACCTTAGAACCGAAGCTACCCGTGACACCGCTGTTGTCATCATGAATAGTGTCACTCTTGTTGATGCCTTCCTCGATGCTCACAAGTGGATGGAGTTGTTTCCCACAATTGTTTCTAGAGCAAAAACCGTCCAAATAATATCTTCAAATGCTTCTGGCCATGCAAGCGGGTCTCTTCAGCTGATGTATGCGGAATTTCAAGTTCTTTCTCCATTGGTATCGACTCGTGAGACTCATTTCCTTCGGTATTGTCAACACAACGCTGAGGAGGGAACGTGGGGAATTGTTGACTTCCCCATCGACAGCTTTCAGCAAAACCTGCACCCTTCTTATCCCAGATACTGTAGGCGACCCTCTGGCTGTCTCATTCAGGATATGCCAAATGGATATTCAAGAGTAACATGGATTGAGCATGCTCAAGTAGAAGAGAAACCTGTTCACCAGATATTCTCCAACTATGTTTACAGTGGTATGGCTTTTGGTGCACACCGCTGGTTAGGTGTTTTGCAGAGACAATGCGAGAGGGTTGCCAGCCTCATGGCCAGAAACATTTCAGATCTTGGAGTGATACACTCACCAGAAGCTAGAAAGAACTTGATGAAACTTGCACAGAGGATGATAAGAACGTTCAGCCTCAACATGAGCACCTCAAGTGGTCAATCATGGACAGCAATATCAGATTCCCCTGAAGACACTGTTAGAATCACCACCAGGAAAATCACAGAGCCTGGTCAACCCAACGGTGTCATACTAGGTGCTGTTTCAACAACTTGGCTTCCCTATTCTCACACCAAGGTCTTTGATCTGCTCAGGGATGAACGCCACAGATCTCAGATGGATGCTCTTTCCAATGGGAATTCACTAAATGAAGTTGCTCACATTGCAAATGGTTCTCATCCAGGAAACTGCATTTCCCTTCTTCGGATAAATGTAGCGAGCAATTCATCTCAGAACGTGGAGCTAATGCTGCAAGAGAGCTGCACGGACCAGTCAGGGAGTGTGGTGGTATACACCACCATTGCTGTAGACTCAATTCAGGTAGCCATGAGTGGAGAGGACCCTTCCTGCATTGCTCTTCTCCCACAAGGCTTCATCATAACCCCAATGCCAATGGCTCCATCGCCCAACAACTCATCCTCTTCTGATCCTCTCATCACTAGTGCATCGCCGTCACCACCGCCACACCATGGGTGCCTCCTCACCGTTGGGCTCCAGATCCTGGCCAGCACCATCCCATCCGCGAAGCTCAACCTGTCGAGCGTGACCTCCATCACGAACCACCTCTGCAGCACGGTGCACCAGATCGAAGCCTCTCTTTGCAACAGCAGCAGCAGCAATGAGGCAACCACCACCAAAACAGTGAACTAA 2310 0.4909 MQNNSFAFMPTMHFHHSFPSMKEEDGILKGKEEIMESGSGSEQVEDKSGNEQETDQQQPQNKKKRYHRHTARQIQEMEALFKECQHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRAENVILRAENETLKNENYRLQASLRSVICPNCGGPGIMGADLGLDEQQLRIENARLREELERVCCLTSRYSGRPIQTMAPPPALMPPSLDLDMNIYPRHHYVDPNIPPCTEMIPVPMLPPEPTQFPEGGLLMEEEKSLAMELAASSMAELVKMCHSNEPLWIRGSDGDREVLNFEEHGRLFPWPLNPKHRTDLRTEATRDTAVVIMNSVTLVDAFLDAHKWMELFPTIVSRAKTVQIISSNASGHASGSLQLMYAEFQVLSPLVSTRETHFLRYCQHNAEEGTWGIVDFPIDSFQQNLHPSYPRYCRRPSGCLIQDMPNGYSRVTWIEHAQVEEKPVHQIFSNYVYSGMAFGAHRWLGVLQRQCERVASLMARNISDLGVIHSPEARKNLMKLAQRMIRTFSLNMSTSSGQSWTAISDSPEDTVRITTRKITEPGQPNGVILGAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSVVVYTTIAVDSIQVAMSGEDPSCIALLPQGFIITPMPMAPSPNNSSSSDPLITSASPSPPPHHGCLLTVGLQILASTIPSAKLNLSSVTSITNHLCSTVHQIEASLCNSSSSNEATTTKTVN 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc397g00003 769 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Stsc397g00003 769 SMART HOX_1 61 124 IPR001356 GO:0003677
Stsc397g00003 769 ProSiteProfiles START domain profile. 255 492 IPR002913 GO:0008289
Stsc397g00003 769 MobiDBLite consensus disorder prediction 17 70 - -
Stsc397g00003 769 MobiDBLite consensus disorder prediction 686 700 - -
Stsc397g00003 769 CDD START_ArGLABRA2_like 259 488 - -
Stsc397g00003 769 CDD homeodomain 63 121 IPR001356 GO:0003677
Stsc397g00003 769 SUPERFAMILY Homeodomain-like 50 121 IPR009057 -
Stsc397g00003 769 Pfam Homeodomain 63 118 IPR001356 GO:0003677
Stsc397g00003 769 Gene3D - 47 132 - -
Stsc397g00003 769 Pfam START domain 265 489 IPR002913 GO:0008289
Stsc397g00003 769 SMART START_1 264 489 IPR002913 GO:0008289
Stsc397g00003 769 Gene3D - 311 477 IPR023393 -
Stsc397g00003 769 MobiDBLite consensus disorder prediction 17 61 - -
Stsc397g00003 769 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Stsc397g00003 769 FunFam Homeobox-leucine zipper protein HDG1 48 136 - -
Stsc397g00003 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 57 753 IPR042160 -
Stsc397g00003 769 MobiDBLite consensus disorder prediction 686 706 - -
Stsc397g00003 769 SUPERFAMILY Bet v1-like 507 750 - -
Stsc397g00003 769 Coils Coil 114 139 - -
Stsc397g00003 769 SUPERFAMILY Bet v1-like 256 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc397g00003 Stsc-Chr397 17088 22267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc397g00003 1 769 Homeobox Transcription Factor Family AT5G46880 57.561 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc397g00003 START 9.2e-38 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc397g00003 - - gmx:100812829 1239.56