Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc395g00004 ATGCAACCAAGTAGTAGTGGCAGTGGTAGTGGCGGTAGTGGTAACGGTAGGGGCGGTGGTGTTGCCAGATTCCGTTCAACTCCAGCGAGCTGGTTAGAATCATTATTTGTCAAGGAGGAAGTGGAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGAAGAAGATCCGCTGGCCTTGAATAGCAGCAGTAGCATCCACCAGGTGGGATTCACTCAGCTTCTTTCCGGTGACACGAGCGGGGTTTTCCGCCACAATAGTTCTCCCGCCGATTTTGTATTGGACTACTCTCAACAATACGTATCCTCCAACTACGACTACGACTACGACTACGCCTACGCTTCTCCGGATAACAGCAGCGCCAGTAATCCAATCCCGCAGGAAATTAAGCAGAGAGAGGTGAAAGTGGAGAATAAGATTATGAAGGACTCTGTGCCTTGGAAAGTTCGGGCAAAGCGTGGCTGCGCTACACATCCAAGGAGTATTGCTGAAAGGGTTCGGAGGACGCGTATCAGTGATCGGATCAGGAAGCTGCAGGAACTTGTGCCGAATATGGATAAGCAAACGAATACTGCAGACATGTTAGATGAGGCAGTAGCTTATGTCAAGTCTCTACAAAAGCAAATTGAGGAACTATCTGAGCAGCAACGGAGGTGTCATTGCATGGTTCAAAATAGTTAA 675 0.4904 MQPSSSGSGSGGSGNGRGGGVARFRSTPASWLESLFVKEEVEEGGGGGGEGEEDPLALNSSSSIHQVGFTQLLSGDTSGVFRHNSSPADFVLDYSQQYVSSNYDYDYDYAYASPDNSSASNPIPQEIKQREVKVENKIMKDSVPWKVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKSLQKQIEELSEQQRRCHCMVQNS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc395g00004 224 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 60 217 - -
Stsc395g00004 224 Pfam Helix-loop-helix DNA-binding domain 158 204 IPR011598 GO:0046983
Stsc395g00004 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Stsc395g00004 224 Gene3D - 154 224 IPR036638 GO:0046983
Stsc395g00004 224 SMART finulus 159 209 IPR011598 GO:0046983
Stsc395g00004 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 221 IPR036638 GO:0046983
Stsc395g00004 224 FunFam Transcription factor bHLH130 family 154 222 - -
Stsc395g00004 224 Coils Coil 193 213 - -
Stsc395g00004 224 MobiDBLite consensus disorder prediction 1 24 - -
Stsc395g00004 224 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc395g00004 Stsc-Chr395 14142 16525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc395g00004 79 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 52.381 9.58e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc395g00004 HLH 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc395g00004 - - adu:107477635 299.671