Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc394g00003 ATGTCTTCAAACAAGGCATTGAAATCAGTGAAGGATGAAAACTCAGACTTGCAGAAGCAGATTGGTTGCATCACTGGTTTTTTTCAACTCTTTGACCGCCACCGTTTCCTCACTCACCAAACACCTTCTTCAACTTCATCAGGTGAATGCAGTAACGGAATCAAAGAGGTTAATACTAAAAACACAATGCACAAAGCAAAGGAAAAGAATCTAAAGGTTGCAAGGGAGAAGCAACAATTCTCCACAGAGTCTTCAATAACTTCTATGTCTTCATCGTCTTGTTCATCTAGCATGTCGTCCCTCGAGTTCAACAGAACAATTCAGACCGAATCGCTATCAACCAGTCGAATCAATGTCTCTGAAAACTTGAATTCAGAACTACCATTGAAGTGCCTTGCCACTCCAACTCAGAAATCCATTGACTTCTATGATATTGTCAAAGAATCAATGCAAAGAGAATCTCATGGATTATCTGTGAAGACTTTGCCTAGAGAGCAAAAGAAGGGTCCGAATCACACCTTGAAATACATCGACTCGCCCCGGCCTCTGCCTTCCCCGAAATCTGTCAATGCAGGAGTTGTTGTCTCTAATGAAGCATTCCACAATCTTGCAAAGTCTAAGAGAGCGCCTTGGGATTCGCCGCGACTCTCTTATGATGGAAGGGATACACAAGACAGATTCAAGACTTCAACAAAGCATAAGGAGTTTCCAAGGTTTTCCTTGGACAGCAAGCAAGGATCCATTGGAGGTTTCAATGAAGGAAACAAGTCTCGCAACCTATTGAAGGGTCCACAAAAAGGACATTTGAGAAGCTCCAGCTCGGTTCTTAACCAGTCGCAAGAACCAGATTCTTCGAGAAGATCGTCCAGCGTTGTAGCAAAGTTAATGGGACTGGAAACATTGCCAGACTGCACACAAACTTGCCAGACTCCACCAGGGAATGCTAGTGGCTACAACAATAAAAATGAGCTGTTGGAAACTACCTCGGCTCGATACAGAATGGCTGATTCAATCACAAACACAACACCATATTCGCGGTTTGCTCTAGAATCAAGTCCATGGAGACAAACTGATGCAAGCCAAGTTCCTCAACTGCATGTGTCCAAGGGAAGTGAATCTGATGTGAAAGCCTCAAAGTCCTGCATCTCTGTATATGGGGAAATCGATAAAAGGCGAGCAGAACTCGAGTTCAAAAAGTCTGGCAAGGATCTGAGAGCCCTTAAACAAATTCTTGATGCAATGCAGAGGTATAAAGATTCATCTGACAGTACTAGTGATCAGGCTTCAAATTCTCCATCTTACAAAAATATTAGTAGTCTCAATCAAGGATCAAAATCACAAAGCCCAAGAATTCGACAAAAAGACTCGGGATCTGTCACAACTGAGACATCAAACACAAGCCAGGGTAGTGAATTGCCAATTGTCATCATGAAACCGGCAAAAGTTGCTAGAAAATCCAATAATCCTTCTTCTAAAGGAATGCGAATCCGTGGTAATGGAAGATTGGTTGAGAAGAAAACTAGCAAAGATATCAGGGATCCTTTTAGTCAATCAATTCTATCAGAAGATAAGAGTGATAACTTGAGAACTTCAAAATCAATGCAATCCTTGAAAGTTCCTCAAGCAAGCAATGGAGAAAACACCAGTTCTGGTAACATAACAGCTGCTAGGAGTCCAAGGGTACAGAAGAAGTTCGGGTTGGAGAAGCGTTCTCCACCAAGCAGCCCATCTTCAGATTCCAGTATTAGCAGAAGGCAGAAGTATAGGAACTCTTTGGATTCAAGAAATGAATGTTTCAGCGAGCCTAGCGTCCACTGGAGGGATTTTAAGGCTCGTGTTAATTTCATCTCTCCAGATTTTGACAACAAGAGAAGCAGTGAAAGAGAAATCGTTGGCATTGCTCAATCAGGAAATACCAATAGCAATCCCATCCATCTTGGTGGCCTGAATCAAAATTGTTCAGGAAGCTCTAATGCTGACACAATAGCTACCATAGAACAACCAAGTCCTGTGTCTGTTCTTGATCCTGCATTCTATAGGGAAGACCCACCATCTCCAGTGAGAAAGAGATCAGACATATCAGATGATTCAGGTGAAGTTCTAAGTGCTGATGAATATAGTGAGGAGAACTCGGTGGATCTTCCTTTATCCAACACAACAAAAACCAACTTCACTCGTGATAGAGACTGGAATACCCAGAATTTCATTCAAAGTCTTCAAGATATCAATCAGAATGATGAGAAACTCACCAGTTTCAGTGACAGTAAGGATTTTGACCATAAATATGTAGCAGAAATCCTGCTAGCATCAGGTCTTCTTAGCGGACGCACCTCAAGCCAGATTTCTCATTCACCAGGTCACTTGATTAACCCAAAGTTGTTCTTTGCATTAGAACAAATGAAAACAAACAAGAAGGATTTTAACAGTAGCAAGATTATTAGTCCAGAACAGCTGCAAAGAAAACTCATATTTGATGTGGTTAATGACATTCTTGTTCAAAAGTCATTCCTGGAGAGTTCTTGCACTCAGTGGCGCCTAACAAACCAGCTACCCGGTGGAAACCTACAGGGGAAGCAGCTTTTGGATGAGGTATGCACAGAAATAGACCAGTTACAACCTCAGAATAAGAGTCTTGACCTGGCCATTGAGGATGAGAATTTGACAAGTCTCTTATGGGGAGATTCACATTTGATGCATCACCCCACAGTATGGACTAACAGCAGCACCGAGATGCCAAATGTTGTGTTGGATATAGAAAGGTTGATCTTTAAAGATTTGATTACTGAAGTTGTTAGAGGAGAATTAGCAAACAGTGCTGGTAGGCATTGCAGGCAATTACTGTTTCATTAG 2850 0.4182 MSSNKALKSVKDENSDLQKQIGCITGFFQLFDRHRFLTHQTPSSTSSGECSNGIKEVNTKNTMHKAKEKNLKVAREKQQFSTESSITSMSSSSCSSSMSSLEFNRTIQTESLSTSRINVSENLNSELPLKCLATPTQKSIDFYDIVKESMQRESHGLSVKTLPREQKKGPNHTLKYIDSPRPLPSPKSVNAGVVVSNEAFHNLAKSKRAPWDSPRLSYDGRDTQDRFKTSTKHKEFPRFSLDSKQGSIGGFNEGNKSRNLLKGPQKGHLRSSSSVLNQSQEPDSSRRSSSVVAKLMGLETLPDCTQTCQTPPGNASGYNNKNELLETTSARYRMADSITNTTPYSRFALESSPWRQTDASQVPQLHVSKGSESDVKASKSCISVYGEIDKRRAELEFKKSGKDLRALKQILDAMQRYKDSSDSTSDQASNSPSYKNISSLNQGSKSQSPRIRQKDSGSVTTETSNTSQGSELPIVIMKPAKVARKSNNPSSKGMRIRGNGRLVEKKTSKDIRDPFSQSILSEDKSDNLRTSKSMQSLKVPQASNGENTSSGNITAARSPRVQKKFGLEKRSPPSSPSSDSSISRRQKYRNSLDSRNECFSEPSVHWRDFKARVNFISPDFDNKRSSEREIVGIAQSGNTNSNPIHLGGLNQNCSGSSNADTIATIEQPSPVSVLDPAFYREDPPSPVRKRSDISDDSGEVLSADEYSEENSVDLPLSNTTKTNFTRDRDWNTQNFIQSLQDINQNDEKLTSFSDSKDFDHKYVAEILLASGLLSGRTSSQISHSPGHLINPKLFFALEQMKTNKKDFNSSKIISPEQLQRKLIFDVVNDILVQKSFLESSCTQWRLTNQLPGGNLQGKQLLDEVCTEIDQLQPQNKSLDLAIEDENLTSLLWGDSHLMHHPTVWTNSSTEMPNVVLDIERLIFKDLITEVVRGELANSAGRHCRQLLFH 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc394g00003 949 MobiDBLite consensus disorder prediction 163 185 - -
Stsc394g00003 949 MobiDBLite consensus disorder prediction 417 597 - -
Stsc394g00003 949 MobiDBLite consensus disorder prediction 266 290 - -
Stsc394g00003 949 MobiDBLite consensus disorder prediction 674 720 - -
Stsc394g00003 949 PANTHER LONGIFOLIA PROTEIN 1 946 IPR033334 GO:0051513
Stsc394g00003 949 MobiDBLite consensus disorder prediction 571 585 - -
Stsc394g00003 949 Pfam Domain of unknown function (DUF4378) 759 929 IPR025486 -
Stsc394g00003 949 MobiDBLite consensus disorder prediction 212 240 - -
Stsc394g00003 949 MobiDBLite consensus disorder prediction 498 529 - -
Stsc394g00003 949 MobiDBLite consensus disorder prediction 206 290 - -
Stsc394g00003 949 MobiDBLite consensus disorder prediction 417 472 - -
Stsc394g00003 949 MobiDBLite consensus disorder prediction 530 557 - -
Stsc394g00003 949 MobiDBLite consensus disorder prediction 682 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc394g00003 Stsc-Chr394 8918 12987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc394g00003 140 948 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 30.586 8.22e-72 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc394g00003 - - adu:107486612 1540.01