Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc394g00001 ATGAAAGATCCATCAGATTTTCCACTAAAACAAGAGACTGATCATCATCATCAACATGAAAAGCCATCATCATCAGCAGCAGCAGCAAAGGCTTCAACAATATCATCATCATCATCATCATCACAATGGCTAAGGTTGAAGGATCCGAGAATTGTTAGGGTATCAAGAGCATTTGGAGGAAAAGACAGGCACAGCAAGGTTTGCACAATAAGAGGGCTAAGAGACAGGCGTGTGAGGCTTTCAGTTCCAACTGCAATTCAGCTCTATGATCTTCAAGATAGGTTAGGGCTTAATCAACCTAGTAAAGTTGTTGATTGGTTGTTGAATGCTGCTAAGCATGAAATTGATGAGCTTCCACCTTTGCCAAATATCACTAATCCATTCACCCTTCCTGGTTCTTCTTCTATGATCATCAATACTAATAATAATAATGAAGGTAGCACCTCAATGTTCAATATCAACAGGAGCATTCATCAGTGGCAAGGCTTAGCACAAAGTTATTCTAAGTGGAATAATAATAATAAGTCAAAGTCATCATCATCATCATTTACTAAACAAGAAGATAATAATCAAATGGTTATTACTGAAGAGGATAAGGAAGAAGAGGAAGAAGAAGATGAAGAAGGTGCTGCAAATGTTGTTTCTAATAATACAAATAATCATCATCCTTCATTCCTAGGTTTGCTGAATACTATGCCAATTGCTGGTAACTACCAATTTGAGGCACATAATAATGATGTGAATGTTGCTCAATTGGGAAACCATCATCATCATGGATTCATTACAAACCAAACAGATTTGCAAAGCATTAATGTGGTGCCTTTTCCATCAACATTGTCCTTATCAACACAGTCATATTTCCCTTCACATTCATCATCAGAAGCAGCAATGGAGGACAACAACAACATGCATCAGATGCTGACTACCTCTCATCATCATCTTCATCAGAATCTCTTCACAAATAATAATCTTCCTCCATCTTTCAGCTTGGCTATGATGAGCACTCCAATCCTTCTCCACCATCCTCATCCCAACACAAGAGAAAGTAGTACTCAATCTCATCATCATCACAAACACCACCATTTTCCTTCTTCCAAGTGA 1101 0.3797 MKDPSDFPLKQETDHHHQHEKPSSSAAAAKASTISSSSSSSQWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPNITNPFTLPGSSSMIINTNNNNEGSTSMFNINRSIHQWQGLAQSYSKWNNNNKSKSSSSSFTKQEDNNQMVITEEDKEEEEEEDEEGAANVVSNNTNNHHPSFLGLLNTMPIAGNYQFEAHNNDVNVAQLGNHHHHGFITNQTDLQSINVVPFPSTLSLSTQSYFPSHSSSEAAMEDNNNMHQMLTTSHHHLHQNLFTNNNLPPSFSLAMMSTPILLHHPHPNTRESSTQSHHHHKHHHFPSSK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc394g00001 366 MobiDBLite consensus disorder prediction 169 218 - -
Stsc394g00001 366 MobiDBLite consensus disorder prediction 25 41 - -
Stsc394g00001 366 MobiDBLite consensus disorder prediction 194 210 - -
Stsc394g00001 366 Pfam TCP family transcription factor 60 207 IPR017887 -
Stsc394g00001 366 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Stsc394g00001 366 MobiDBLite consensus disorder prediction 339 366 - -
Stsc394g00001 366 MobiDBLite consensus disorder prediction 1 23 - -
Stsc394g00001 366 MobiDBLite consensus disorder prediction 352 366 - -
Stsc394g00001 366 MobiDBLite consensus disorder prediction 169 190 - -
Stsc394g00001 366 MobiDBLite consensus disorder prediction 1 41 - -
Stsc394g00001 366 Coils Coil 185 205 - -
Stsc394g00001 366 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 344 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc394g00001 Stsc-Chr394 1094 2194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc394g00001 14 308 TCP Transcription Factor Family AT3G02150 38.436 5.16e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc394g00001 TCP 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc394g00001 - - var:108327895 264.233