Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc392g00004 ATGATGCCACCAACTCCAACCAGTGAGGGAGAGATCTTGCACTGTTCAAATTTAAAGAGCTTTAGTTTATCAGAACTGAAGGCAGCCACAAGAAATTTCCATCGGAACAATCTGCTAGGAGAAGGTGATTTCGGTTCTGTTTTTAAGGGTTGGATTGATGAGAGTTCTTTGGTGGCTGCCAAACCTGGCACTGGTGTTGTTATTGCCGTGAAGATACTTAATCAAGATGGTTTAGAGGGTCACAGTGAGTGGTTGGCTGAAGTAAACTATCTGGCACAATTTTCTCATTCTCATCTAGTGAGACTAATTGGATATTGCCTTAAAGATAAAGACCGCCTTCTCGTTTACGAGTATATGCCTCGCGGCAGCTTGGAGAATTATTTGGGAAGCGCCCACTTTCAACCTCTATCATGGAGTCTCCGTTTAAAGATTGCTCTTGATGCAGCCAAAGGGCTTGCATTCCTTCACATTGCAGAAACAAAAGTGGTTTGCCTTGATTTTAAGGCATCCAATGTCTTGCTTGACTCAAATTACAATGCAAAACTTTCGGTTTCCGTGCTAGCAAAGGATGGAATCTCATACGACCAAACTAATGCCAATGCTGCTAGGGAGTTCAGACATGCCAGCAGAAATATAGCTCCTGAATTTATTCTCACTGGTATGGTTGGTTTCAAGTTGCTGAACAAATTTTGCTTCCAATATATGTTAATTCATGATTAA 720 0.4153 MMPPTPTSEGEILHCSNLKSFSLSELKAATRNFHRNNLLGEGDFGSVFKGWIDESSLVAAKPGTGVVIAVKILNQDGLEGHSEWLAEVNYLAQFSHSHLVRLIGYCLKDKDRLLVYEYMPRGSLENYLGSAHFQPLSWSLRLKIALDAAKGLAFLHIAETKVVCLDFKASNVLLDSNYNAKLSVSVLAKDGISYDQTNANAAREFRHASRNIAPEFILTGMVGFKLLNKFCFQYMLIHD 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc392g00004 239 Gene3D Phosphorylase Kinase; domain 1 5 118 - -
Stsc392g00004 239 ProSiteProfiles Protein kinase domain profile. 33 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc392g00004 239 FunFam Serine/threonine-protein kinase BIK1 3 118 - -
Stsc392g00004 239 SUPERFAMILY Protein kinase-like (PK-like) 11 221 IPR011009 -
Stsc392g00004 239 Pfam Protein tyrosine and serine/threonine kinase 36 219 IPR001245 GO:0004672|GO:0006468
Stsc392g00004 239 Gene3D Transferase(Phosphotransferase) domain 1 119 226 - -
Stsc392g00004 239 ProSitePatterns Protein kinases ATP-binding region signature. 39 71 IPR017441 GO:0005524
Stsc392g00004 239 PANTHER OS01G0588500 PROTEIN-RELATED 11 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc392g00004 Stsc-Chr392 11057 13950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc392g00004 19 225 Glycoside Hydrolase AT3G07070 42.857 4.73e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc392g00004 PK_Tyr_Ser-Thr 3.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc392g00004 - - gmx:100788856 293.508