Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc392g00003 ATGATGCCACCAACTCCAACCAGTGAGGGAGAGATCTTGCACTGTTCAAATTTAAAGAGCTTTAGTTTATCAGAACTGAAGGCAGCCACAAGAAATTTCCATCGGAACAATCTGCTAGGAGAAGGTGATTTCGGTTCTGTTTTTAAGGGTTGGATTGATGAGAGTTCTTTGGTGGCTGCCAAACCTGGCACTGGTGTTGTTATTGCCGTGAAGATACTTAATCAAGATGGTTTAGAGGGTCACAGTGAGTGGTTGGCTGAAGTAAACTATCTGGCACAATTTTCTCATTCTCATCTAGTGAGACTAATTGGATATTGCCTTAAAGATAAAGACCGCCTTCTCGTTTACGAGTATATGCCTCGCGGCAGCTTGGAGAATTATTTGGGAAGCGCCCACTTTCAACCTCTATCATGGAGTCTCCGTTTAAAGATTGCTCTTGATGCAGCCAAAGGGCTTGCATTCCTTCACATTGCAGAAACAAAAGTGGTTTGCCTTGATTTTAAGGCATCCAATGTCTTGCTTGACTCAAATTACAATGCAAAACTTTCGGTTTCCGTGCTAGCAAAGGATGGAATCTCATACGACCAAACTAATGCCAATGCTGCTAGGGAGTTCAGACATGCCAGCAGAAATATAGCTCCTGAATTTATTCTCACTGGCCACCTTACTGCTCGGGGTAATGTCTATAGTTTTGGAGTATTCCTACTTGAAATGTTATCCGGCAAGAGGGTGTTTGACAATTATCGACCAACTGGACAACGCAATCTGGTGGAGTGGGCTAAACCATACCTGGCTAACAAATGCGAGGTCTTGCAAGTTTTGGACACGCATCTTGAAGGGCAGTATTCAGTTGAGGACGCCTACAAGCTAGCCACGCTCACCTTGCAATGCATATCTGAATTACCCAAATCCAGGCCAAACATGGATGAAGTTGTTGCATTATTGGAGCAGCTGCAAGCTCCTATCTGCTGA 972 0.4403 MMPPTPTSEGEILHCSNLKSFSLSELKAATRNFHRNNLLGEGDFGSVFKGWIDESSLVAAKPGTGVVIAVKILNQDGLEGHSEWLAEVNYLAQFSHSHLVRLIGYCLKDKDRLLVYEYMPRGSLENYLGSAHFQPLSWSLRLKIALDAAKGLAFLHIAETKVVCLDFKASNVLLDSNYNAKLSVSVLAKDGISYDQTNANAAREFRHASRNIAPEFILTGHLTARGNVYSFGVFLLEMLSGKRVFDNYRPTGQRNLVEWAKPYLANKCEVLQVLDTHLEGQYSVEDAYKLATLTLQCISELPKSRPNMDEVVALLEQLQAPIC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc392g00003 323 ProSiteProfiles Protein kinase domain profile. 33 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc392g00003 323 Pfam Protein tyrosine and serine/threonine kinase 36 314 IPR001245 GO:0004672|GO:0006468
Stsc392g00003 323 Gene3D Transferase(Phosphotransferase) domain 1 119 321 - -
Stsc392g00003 323 PANTHER OS01G0588500 PROTEIN-RELATED 11 319 - -
Stsc392g00003 323 SUPERFAMILY Protein kinase-like (PK-like) 11 317 IPR011009 -
Stsc392g00003 323 Gene3D Phosphorylase Kinase; domain 1 5 118 - -
Stsc392g00003 323 FunFam Serine/threonine-protein kinase BIK1 3 118 - -
Stsc392g00003 323 ProSitePatterns Protein kinases ATP-binding region signature. 39 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc392g00003 Stsc-Chr392 11057 13950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc392g00003 19 315 Glycoside Hydrolase AT3G07070 41.368 2.57e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc392g00003 PK_Tyr_Ser-Thr 3.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc392g00003 - - gmx:100798404 431.795