Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc391g00004 ATGGTGAGAGCTGCTTACTTTGATGCCAATGGAATAAAGAAAGGTGCCTGGAGTGAGGAAGAGGATAAGAGGCTTATTGCTTATGTTGAGAGATACGGTCACCCTAATTGGCGTCAACTCCCAAGGCTTGCAGGTTTGTTGAGATGTGGAAAGAGCTGCAGACTTCGTTGGATGAATTACCTGCGGCCAAATCTAAAGAGAGGGAACTACACTCAAAAGGAAGAGCAACTTATCATGGATTTGCATAAAGAACATGGAAACAAATGGTCTCTGATTGCTGAAAATCTACCTGGAAGAACGGATAATGAGATCAAGAACTATTGGCATAGCCACCTGAAGAAATTCCAAAACCGCAATGTGAACAACACAACATATGATGATGACGATGATGATTTGAACAAGTCCAAGTCCAAGTCTTCTTCTGAGAGTACCATGGAACACGAAAGACCAAAATGTGAACTGAGTAATGATGATTCACACCACATTATCTTGGAAAGTTCAGTGTCCAATGTGTCAACTGAGTCTTCCTATTCCTCCTACACGGAAGAAGACAACAAGCGAAATAACGATGACGGCGACAATGACACCGTTGACAACAACGACAACTCATGGTTCTGTTTTTCCTCTGGTCGGGAAGAAGAGTCGAATAGGAAAGATGATAGGGTTGCTTCGTGGGATAAAGCAACTTTGTTTGATGAGTTTGGCTCCAGTTTTTGGACTGAACCATTTATTTTGGATAATACTTTCAATCAAGATTATAGTTACATTTTGTATTATAGAGAAGATCCTTTTTTCATTTGA 801 0.4057 MVRAAYFDANGIKKGAWSEEEDKRLIAYVERYGHPNWRQLPRLAGLLRCGKSCRLRWMNYLRPNLKRGNYTQKEEQLIMDLHKEHGNKWSLIAENLPGRTDNEIKNYWHSHLKKFQNRNVNNTTYDDDDDDLNKSKSKSSSESTMEHERPKCELSNDDSHHIILESSVSNVSTESSYSSYTEEDNKRNNDDGDNDTVDNNDNSWFCFSSGREEESNRKDDRVASWDKATLFDEFGSSFWTEPFILDNTFNQDYSYILYYREDPFFI 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc391g00004 266 CDD SANT 69 112 IPR001005 -
Stsc391g00004 266 CDD SANT 16 61 IPR001005 -
Stsc391g00004 266 Gene3D - 7 67 - -
Stsc391g00004 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc391g00004 266 SMART sant 66 114 IPR001005 -
Stsc391g00004 266 SMART sant 13 63 IPR001005 -
Stsc391g00004 266 MobiDBLite consensus disorder prediction 161 179 - -
Stsc391g00004 266 Gene3D - 69 114 - -
Stsc391g00004 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc391g00004 266 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc391g00004 266 MobiDBLite consensus disorder prediction 123 160 - -
Stsc391g00004 266 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 207 - -
Stsc391g00004 266 MobiDBLite consensus disorder prediction 180 194 - -
Stsc391g00004 266 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc391g00004 266 MobiDBLite consensus disorder prediction 123 200 - -
Stsc391g00004 266 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc391g00004 266 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc391g00004 266 FunFam MYB-related transcription factor 13 66 - -
Stsc391g00004 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc391g00004 Stsc-Chr391 42276 43855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc391g00004 1 190 MYB Transcription Factor Family AT2G31180 45.455 5.10e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc391g00004 Myb_DNA-binding 9.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc391g00004 K09422 - gmx:100781032 286.189