Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc391g00001 ATGGAGTTTGACCTTGAAAACCCTCTAGAGAACTCTCTTCAATGGCAGCATGATGATTTTGCTTCACTATTCCTCATTGAATCTCAACACACTCCATCTCACACTTACTTTCAGTCTCTCAACAAAGCTGCAAACTTTAACATCTCTGTTAGAACACAACTCATTTCTCTAATCTCAAAGTTTTCTTGCAGCTTGGATCCACTTGTGTCTTACCTTTCAATCAACTATCTTGACCGGTTCTTGTCCAACCAAGGCATACTGAATAAACAGAAACAACAAAAGGCATGGGCCCTTAGGTTGCTTGCAATTTCCTGCATTTCTTTAGCATCCAAGATGATAAAGTCAGGGTACTCTGCCATTGATATTCAGGCACTTCTGGTGAATGATGGTGGCATCATTTTTGAGACACAAACAATGCAAAGAATGGAAGGAGTGATATTGGGAGCATTGGAATGGAGAATGCGGTCCATCACCCCTTTCTCATTCTTAAATTTCTTCATCACTTTAATATGTGTCAAGGACCCAATGGAACAGGTTCTCAAGAAGAGAGTGCCTCAAATTCTATTCAACTCACAAGGAGAGATAAAGCTTTTGCAATTCAAGCCATCTATCATTGCTGCATCAGCACTTCTATATGCTTCTCATGAGCTTTTTCCTTTTCAATTCCAAAGCTTCTCAGCAGCAATATGCAATTGTTCATATGTAAATAAAGTACATCCTGATCCTGAGCCCTTTTACTATTTTCATTAA 750 0.3907 MEFDLENPLENSLQWQHDDFASLFLIESQHTPSHTYFQSLNKAANFNISVRTQLISLISKFSCSLDPLVSYLSINYLDRFLSNQGILNKQKQQKAWALRLLAISCISLASKMIKSGYSAIDIQALLVNDGGIIFETQTMQRMEGVILGALEWRMRSITPFSFLNFFITLICVKDPMEQVLKKRVPQILFNSQGEIKLLQFKPSIIAASALLYASHELFPFQFQSFSAAICNCSYVNKVHPDPEPFYYFH 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc391g00001 249 SMART cyclin_7 52 148 IPR013763 -
Stsc391g00001 249 Pfam Cyclin, C-terminal domain 157 237 IPR004367 -
Stsc391g00001 249 Gene3D - 22 218 - -
Stsc391g00001 249 Gene3D - 33 155 - -
Stsc391g00001 249 PANTHER CYCLINS 19 215 IPR039361 -
Stsc391g00001 249 FunFam D6-type cyclin 153 239 - -
Stsc391g00001 249 Pfam Cyclin, N-terminal domain 26 154 IPR006671 -
Stsc391g00001 249 SUPERFAMILY Cyclin-like 13 154 IPR036915 -
Stsc391g00001 249 FunFam D6-type cyclin 33 152 - -
Stsc391g00001 249 SUPERFAMILY Cyclin-like 139 214 IPR036915 -
Stsc391g00001 249 CDD CYCLIN_AtCycD-like_rpt2 157 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc391g00001 Stsc-Chr391 1855 3128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc391g00001 1 237 Core Cell Cycle Gene Families AT4G03270 46.429 4.17e-62 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc391g00001 K18812 - gmx:100799951 280.796