Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc390g00007 ATGGCGGGTGTGAGGTTTTGCGAGAGCGAACAAGACAGGGTTGTGTTGGAGTCTTTGCTTGGCGTCGAAGCTGTTGAATTCTTTAATTCAGCAATTTCAAATAATTACTTTTCCGATGTTATTGTTCGGCCGAGTCCCGACTTGGGTCACCGCCAGCGTTTGCGCCACCTTGTTGAGGCGTCCAATTGGGACTATGCCATTTTATGGCAGGTTGCTGCCTTGAAATCTGGTGGCTATGCATTGAAATGGGGCGATGGGCACTGTCGGGTTCCCGAAGGAAGTCAGAGGAATGAGCAGGAGGACGAGGCCAAACGGTGCGTGCTGCAGAAGCTTCATGCTTTTTTTGGGGGTTCCGACTCCAATGAGGCTGTTTATACAAGCTTGGATAGGGTCTCTGCCTTGCCTATGTTTTACTTGACATCCAAGTTTTATATGTTTGGTTCCGATTCCCCGTCTGGCCCCGGGAGCTCTTTCAAGTGTGGTAAATCAATTTGGGCTTCTGATGCTGCTAGTTGCTTGGATCAATACGGATCAAGATCATTCCTAGCAAAGTTGGCTGGTTTCCAAACGGTTGTTTTTGTGCCTCTCAAAGCCGGAGTTGTTGAGCTTGGTTCAATGGAAATGAAGACTGAAGAGCATGGTATATTGGATATGATTAGGACAGCGTTTGGAGATTCTAGTTCTGCACAGGCAAAGGTGGTGCCCCGGATTTTCGGGCGTGAACTTAGCCTGGGGGATATGAAATCTCAGCCCGGAAATATTAACTACTCCCCGAAGATGGAAGATGATTCTGGTTTCACTTCCGATTCATATGAAGTACAAGCACCGGACCCAAACCATGTATATGGAAATTCTTCCAATGGATCTATAGGGGACAGTAATGAAGCAAAGCTGTTCCCTCAATTGAATCAAATAGCTTCTGGGAGTGTTAATCCTCAAGCAAGGTTGTCTTCTTTAGACATGGGCACTGAAGACTCGCCCTCGCCTCTTCAGGGTGAGCGGAGGCCCAGAAAAAGAGGGAGAAAGCCTGCCAATGGGAGAGAGGAGCCACTGAATCATGTCGAAGCAGAGAGACAGAGAAGGGAGAAGCTTAACCAGAGATTCTATGCCTTAAGAGCTGTTGTTCCCAACATATCCAAAATGGACAAGGCATCACTGCTTGGCGATGCTATTGCGCATATCACTGATCTCCAAAAGAAAATCTCAGCCTTAGAAGCGGAAAAAGGTCTGACTCACAAGAATAATGACAAGGAGCTTCCTTTATCAGATATTGATTTCCAGGCTAGAAAGGATGATGCAGTTGTCAGAGTGAGCTTCCCCTTGGATACTCACCCAGTTTCTGGTGTTGTTAAAACGCTCAGGGAGCATCAAATTGCTGCTCAAGAGTTCAATGTTTCAACTGCACAGGATAAGGTAATACATACATTCTCCATAAGAATTCAAGGGAATGAGGCTGCTGCTGTACAGTTGAAAGCAAAGCTTGAAGCATCTCTATTAAAAATTTGA 1506 0.4615 MAGVRFCESEQDRVVLESLLGVEAVEFFNSAISNNYFSDVIVRPSPDLGHRQRLRHLVEASNWDYAILWQVAALKSGGYALKWGDGHCRVPEGSQRNEQEDEAKRCVLQKLHAFFGGSDSNEAVYTSLDRVSALPMFYLTSKFYMFGSDSPSGPGSSFKCGKSIWASDAASCLDQYGSRSFLAKLAGFQTVVFVPLKAGVVELGSMEMKTEEHGILDMIRTAFGDSSSAQAKVVPRIFGRELSLGDMKSQPGNINYSPKMEDDSGFTSDSYEVQAPDPNHVYGNSSNGSIGDSNEAKLFPQLNQIASGSVNPQARLSSLDMGTEDSPSPLQGERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAHITDLQKKISALEAEKGLTHKNNDKELPLSDIDFQARKDDAVVRVSFPLDTHPVSGVVKTLREHQIAAQEFNVSTAQDKVIHTFSIRIQGNEAAAVQLKAKLEASLLKI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc390g00007 501 MobiDBLite consensus disorder prediction 316 359 - -
Stsc390g00007 501 MobiDBLite consensus disorder prediction 248 295 - -
Stsc390g00007 501 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 223 IPR025610 -
Stsc390g00007 501 MobiDBLite consensus disorder prediction 342 359 - -
Stsc390g00007 501 Pfam Helix-loop-helix DNA-binding domain 352 398 IPR011598 GO:0046983
Stsc390g00007 501 CDD bHLH_AtAIB_like 345 408 - -
Stsc390g00007 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Stsc390g00007 501 Coils Coil 387 407 - -
Stsc390g00007 501 Gene3D - 342 415 IPR036638 GO:0046983
Stsc390g00007 501 PANTHER MYC 49 497 IPR045084 GO:0003700|GO:0006355
Stsc390g00007 501 SMART finulus 354 403 IPR011598 GO:0046983
Stsc390g00007 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 414 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc390g00007 Stsc-Chr390 30554 32742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc390g00007 3 498 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.104 1.49e-154 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc390g00007 bHLH-MYC_N 9.4e-37 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc390g00007 - - gmx:100782107 632.484