Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc390g00003 ATGTCGTCCGAAGACCCCACCGTTGCCGTAGAGCAACCTACAGCTGAAACCGAAGCAACCGCCGATCCAGCCCCGGAGGCAGAGCCCGAGAACCCAGCTGCCAATACGAAGAAGGCCGCCAAGGAGCCCAAGCCCAAGAAAGCCGCCGCTCCTAGATCCCGAAACCCTTCCTCTCACCCTCCCTACGAAGAGATGATCAAGGACGCGATTGTGACCTTGAAGGAGAAGAACGGGTCCAGTCAATACGCGATTCAGAAGTTCATCGAAGAGAAGCAGAAGCAGCTACCTTCCAACTTCAGGAAGCTCTTGTTGTATCATTTGAAGAAGCTCGTTGCTTCCGGAAAGCTCGTTAAGGTCAAAGGCTCCTTCAAGCTTCCTCCGCTAAGATCTTCAGCTCCCAAGCCCGCTGCTGCTGCTCCTGCCAAGAAGAAGCCTGCACCTGCTAAGCCTAAACCAAAGCCCAAGCCCAAAGCTAAGCCAACCTCTAAAGCCAAGGCCACCAAGACCACTAAGTCTGCAGCTGCCAAAGCACCTGCCAAGACCAAGACCGCCGCTAAGCCCAAACCCAAGCCTAAGCCCGCTGCTAAACCCAAGGCGGCTGCTGCTAAGCCCAAGGCAGCTCCGGCCAAGTCTAAGGCTAAGGCTAAGACTGCCCCAGCTGCAAAGCCAAAGGCAGCTGCGAAGCCTAAAGCGGCTGCGAAGGCGAAGCCGAAGGCGAAGGAGAGGCCAGCTAAGGCTTCTAGAACGTCGACGAGAACTTCACCCGGGAAGAAAGCCCCTGCCGCAAAAGCGGTGGCGAAGAAAGCCGCTCCGGCAAAGAAAGCCCCTGCAAAGGGTGCAAAGGCGAAGGGCGTGAAATCTCCTGCGAAGAAGGTGACGACGGCGAGAAGGGGGAGAAAGTGA 903 0.5681 MSSEDPTVAVEQPTAETEATADPAPEAEPENPAANTKKAAKEPKPKKAAAPRSRNPSSHPPYEEMIKDAIVTLKEKNGSSQYAIQKFIEEKQKQLPSNFRKLLLYHLKKLVASGKLVKVKGSFKLPPLRSSAPKPAAAAPAKKKPAPAKPKPKPKPKAKPTSKAKATKTTKSAAAKAPAKTKTAAKPKPKPKPAAKPKAAAAKPKAAPAKSKAKAKTAPAAKPKAAAKPKAAAKAKPKAKERPAKASRTSTRTSPGKKAPAAKAVAKKAAPAKKAPAKGAKAKGVKSPAKKVTTARRGRK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc390g00003 300 MobiDBLite consensus disorder prediction 1 69 - -
Stsc390g00003 300 MobiDBLite consensus disorder prediction 123 300 - -
Stsc390g00003 300 CDD H15 56 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc390g00003 300 SMART h15plus2 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc390g00003 300 Pfam linker histone H1 and H5 family 59 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc390g00003 300 SUPERFAMILY "Winged helix" DNA-binding domain 54 127 IPR036390 -
Stsc390g00003 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 58 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc390g00003 300 MobiDBLite consensus disorder prediction 35 49 - -
Stsc390g00003 300 FunFam Histone H1 53 138 - -
Stsc390g00003 300 PRINTS Histone H5 signature 149 163 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc390g00003 300 PRINTS Histone H5 signature 186 203 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc390g00003 300 PRINTS Histone H5 signature 45 66 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc390g00003 300 PRINTS Histone H5 signature 72 89 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc390g00003 300 PANTHER HISTONE H1 28 275 - -
Stsc390g00003 300 MobiDBLite consensus disorder prediction 146 164 - -
Stsc390g00003 300 Gene3D - 54 131 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc390g00003 Stsc-Chr390 13956 16308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc390g00003 28 153 Single Myb Histone (SMH) Gene Family AT1G49950 32.353 7.51e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc390g00003 K11275 - pvy:116113303 144.436