Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc390g00002 ATGGCTGATGTTGAAGCAGAAGTCGCGACGGGACAACCGAAGAAGAGGACGTTCAAGAAGTTCAGCTTCAGAGGCGTCGATCTCGATGCTCTTTTGGACATGTCCACCGATGAACTTGTCAAGCTCTTCACTGCACGCGCCCGCAGAAGGTTTCAACGCGGTTTGACGCGCAAGCCTATGGCGCTAATCAAGAAGCTCCGTAAGGCGAAAAGGGAAGCTCCAGCTGGTGAAAAGCCAGAGCCAGTAAGGACTCACCTTCGCAACATGATCATTGTGCCTGAAATGATTGGTAGCATCATTGGGGTCTACAATGGTAAGACCTTCAATCAAGTTGAAATCAAACCAGAAATGATAGGCCACTATCTAGCTGAATTCTCAATCTCTTACAAGCCTGTAAAGCATGGAAGGCCTGGTATTGGTGCAACTCACTCCTCGAGGTTCATTCCTCTCAAGTGA 456 0.4868 MADVEAEVATGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc390g00002 151 PRINTS Ribosomal protein S19 family signature 116 131 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc390g00002 151 PRINTS Ribosomal protein S19 family signature 84 103 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc390g00002 151 PRINTS Ribosomal protein S19 family signature 104 116 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc390g00002 151 NCBIfam 30S ribosomal protein S19 18 151 IPR005713 GO:0003735|GO:0006412|GO:0015935
Stsc390g00002 151 Hamap 30S ribosomal protein S19 [rpsS]. 47 140 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc390g00002 151 ProSitePatterns Ribosomal protein S19 signature. 104 128 IPR020934 GO:0003723
Stsc390g00002 151 Gene3D 30s Ribosomal Protein S19; Chain A 8 151 IPR023575 GO:0003735|GO:0005840|GO:0006412
Stsc390g00002 151 Pfam Ribosomal protein S19 49 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc390g00002 151 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 5 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc390g00002 151 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 9 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Stsc390g00002 151 FunFam 40S ribosomal protein S15 8 151 - -
Stsc390g00002 151 SUPERFAMILY Ribosomal protein S19 54 135 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc390g00002 Stsc-Chr390 8930 10756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc390g00002 1 151 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.079 3.14e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc390g00002 K02958 - rcu:8280171 295.049