Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc390g00001 ATGGAGGAAGTTGAAGAAGCTAACAGAGTTGCTGTTGAGAGCTGCCATAGAGTTGTAACAATGTTGTCTCAGCCTCAGGATCAAGTTCATTATAGGAATTTAATGGTGAAAACTGGTGAAGCTGTGATGAAGTTCAAGAAAGTTGTTTCCTTGCTGAGTAATAGTTTGGGTCATGCAAGAATTAGGAAGCATAAGAAGCTTCAAGTACCATTTTCTCAAAGCATCCTCTTGGAAAGCTCAATGTGCATAAGGAACAATGACCAATCTAAGTATTTGAAATTTTCTGAGGGTGATTTTCATGATAATTCAGCTCAGGAATTGTTGGGTTTAACAGTCAGGAATTCGCAATGTGTGGCTGTGAAACCGGCCTTGGAATTGAGCTCCTCCAATGGTAATGGGAAGAGTCCTCTTCAACTTGCTCAACAACTCTCATCAACACACTATCATATTCTTCAGCAGCAGCAGCAGCAACAAAGGGCATTGCTGCATCAGCAACAAATGAAACATCAAGTGGAAATTATGTTCCGAAGGAACAACACTAACAGCAACAACAAGAGTGTCGTAAATCTGAATTTTGATAATAGTTCTAGCTGCACACCAACAATGTCGTCTACTAGGTCTTTTATTTCTTCCCTTAGCATAGATGGGAGCGTGGCGAACATGGAAGGAAGCGCCTTCCATCTGATCGGAGCTGCTGCAGGCTCCTCTGATCAGAACTCACAACAGCATAAGAGAAAATGTTCTGCTAGAGGCGATGAGGGGAGCGGTGCTAAATGTCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATCAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATCCCCCCTGATGATTATTCATGGAGGAAGTACGGGCAGAAGCCGATCAAGGGGTCTCCACACCCCAGGGGGTATTATAAGTGCAGCAGCATGAGAGGGTGCCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTTCCATGCTAATGGTTACCTATGAAGGGGAGCACAACCACCCTAAATTATCAACACAATCTGCAAATGCATGA 1065 0.4376 MEEVEEANRVAVESCHRVVTMLSQPQDQVHYRNLMVKTGEAVMKFKKVVSLLSNSLGHARIRKHKKLQVPFSQSILLESSMCIRNNDQSKYLKFSEGDFHDNSAQELLGLTVRNSQCVAVKPALELSSSNGNGKSPLQLAQQLSSTHYHILQQQQQQQRALLHQQQMKHQVEIMFRRNNTNSNNKSVVNLNFDNSSSCTPTMSSTRSFISSLSIDGSVANMEGSAFHLIGAAAGSSDQNSQQHKRKCSARGDEGSGAKCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLMVTYEGEHNHPKLSTQSANA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc390g00001 354 Pfam WRKY DNA -binding domain 288 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc390g00001 354 SUPERFAMILY WRKY DNA-binding domain 284 346 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc390g00001 354 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 351 IPR044810 GO:0003700
Stsc390g00001 354 MobiDBLite consensus disorder prediction 243 259 - -
Stsc390g00001 354 MobiDBLite consensus disorder prediction 233 265 - -
Stsc390g00001 354 FunFam WRKY transcription factor 65 270 347 - -
Stsc390g00001 354 Pfam Plant zinc cluster domain 244 284 IPR018872 -
Stsc390g00001 354 Gene3D WRKY domain 271 346 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc390g00001 354 ProSiteProfiles WRKY domain profile. 281 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc390g00001 354 SMART WRKY_cls 286 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc390g00001 Stsc-Chr390 6529 8290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc390g00001 1 351 WRKY Transcription Factor Family AT2G30590 52.296 1.51e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc390g00001 WRKY 4.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc390g00001 - - gmx:100170681 477.633