Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc385g00008 ATGGAAACAATTCTTGTTCTTCTCCTTCTTGTGGCAGTTTCTTGCTCCTCTAATTCCAATTCATCTCCTTCTGGGTTAAATAAAAATGATAGCAGGTCCATTTGTAACCAGTACAGTAGAGTGTGCGGACCAAACGGGAACTGCGATGAGACACAAACTTGTGTGTGCTTCGATGGTTTCACACCTAAGTCTCCATATGATTACGCTTACGTGAACACTAGACAGGGATGTGTAAGAATAAAACCTTTGAATTGTAACACTGACGTGTTTGTTAGATATTCTTCGCTTAAAGAACCAAGTGGTGGTTATTCTCTGTCAAACCAAGAGGATTGCATGGGAAAATGCAAGAGTGAATGTTCTTGTATGGCCTATAAAGTAGTTGTTGGGGGTGGATGCAAATTGTGGAATGGTGATTTGTTTGATGCTGTGTTGGTCAAGCAAGGTGGACAAGATCTTTATATTCGAATGCCAGCTTCAGAGGAACAAGCAATATCAACGGAACAGGGGCGAAACAAGGGAGTGGTGGTAGGAATAGTTGTTGGGAGCAGTGTTGTTGTAATTTCCATGGTAATGGCTTCATGGTACATGCTTAGGAAAAGAAGAGCTTCAAAAGCACTGGAACACGTACGGATTGAGAAGATTGTTACTCATGACACCGATACACAAAAGGAAGATATGGGGCTTCCATTATTTGATCTATCAAGAATAGCTATGGCCACTAATAATTTCTCCCCCAACAATAAGCTTGGAGAAGGTGGTTTTGGCCCTGTTTACAAGGGCATATTGGATGATGGACAAGAAATTGCAGTTAAGAGACTTTCAAGTAGTTCTGGACAGGGTTTAAATGAATTTAAAACTGAAGTAAAGCTCATAGCTAAACTTCAACATCGTAATCTTGTAAAGCTTTTTGGATGCTGCATTCAAGAAGAGGAGAAATTGCTAATATATGAATACATGCCTAATAAAAGCTTGGACTATTTTATTTTTGATCATGAGCGAAGGAGTGCCTTAGATTGGTCTAAGCGCTCTAACATTATCAGAGGAATTGCGAAAGGCTTATTATATTTGCATCAAGATTCAAAACTAAGAATTATACATAGAGATCTTAAAACAAGTAATATTTTATTAGATACTAAGATGGATCCCAAAATATCAGATTTTGGTTTAGCTAGAAGTTTTGGAAGTAATCAAAGTAAAGCAAATACAAATAGAGTCGTTGGAACTTTTGGATATATGGCTCCAGAATATGCTATCAACGGAGAATTTTCGATAAAATCAGACGTTTTTAGCTTTGGTATCTTATTACTTGAGATTTTATCCGGAAGGAGAAATAGAAGATTATATTATACAAGTGACAATACCGATAGCTTATATGGAAATACATGGGATTTATGGAAGCAAGGAAGGTCACTGGAGTTGGTGGATGAATGCCTCAAAGAATCAAGGAAAGTTTGTGAAGTACAACGTTGTATCCACATTGGTCTCCTATGTGCACAGCAATATCCCCATGATAGACCAACCATGTCTTCTGTGGTTTTAATGCTGGGAAGTGAAATTGATTTGCCTCAACCCAAAGCTCCTACGTTTTTTATTTGTGAACCTTTTGATGCTTCAAGTTCCTCCACAACATGTAAAAACGAATTAAGCATTACAGAGATGGATCCTCGATAA 1671 0.3788 METILVLLLLVAVSCSSNSNSSPSGLNKNDSRSICNQYSRVCGPNGNCDETQTCVCFDGFTPKSPYDYAYVNTRQGCVRIKPLNCNTDVFVRYSSLKEPSGGYSLSNQEDCMGKCKSECSCMAYKVVVGGGCKLWNGDLFDAVLVKQGGQDLYIRMPASEEQAISTEQGRNKGVVVGIVVGSSVVVISMVMASWYMLRKRRASKALEHVRIEKIVTHDTDTQKEDMGLPLFDLSRIAMATNNFSPNNKLGEGGFGPVYKGILDDGQEIAVKRLSSSSGQGLNEFKTEVKLIAKLQHRNLVKLFGCCIQEEEKLLIYEYMPNKSLDYFIFDHERRSALDWSKRSNIIRGIAKGLLYLHQDSKLRIIHRDLKTSNILLDTKMDPKISDFGLARSFGSNQSKANTNRVVGTFGYMAPEYAINGEFSIKSDVFSFGILLLEILSGRRNRRLYYTSDNTDSLYGNTWDLWKQGRSLELVDECLKESRKVCEVQRCIHIGLLCAQQYPHDRPTMSSVVLMLGSEIDLPQPKAPTFFICEPFDASSSSTTCKNELSITEMDPR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc385g00008 556 SMART ntp_6 85 156 IPR003609 -
Stsc385g00008 556 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 319 523 - -
Stsc385g00008 556 ProSiteProfiles Protein kinase domain profile. 243 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc385g00008 556 Gene3D Transferase(Phosphotransferase) domain 1 319 522 - -
Stsc385g00008 556 Pfam PAN-like domain 85 141 IPR003609 -
Stsc385g00008 556 SUPERFAMILY Protein kinase-like (PK-like) 226 538 IPR011009 -
Stsc385g00008 556 Pfam Protein kinase domain 246 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc385g00008 556 CDD PAN_AP_plant 82 157 - -
Stsc385g00008 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 364 376 IPR008271 GO:0004672|GO:0006468
Stsc385g00008 556 SMART serkin_6 243 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc385g00008 556 ProSiteProfiles PAN/Apple domain profile. 85 157 IPR003609 -
Stsc385g00008 556 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 33 539 - -
Stsc385g00008 556 Gene3D Phosphorylase Kinase; domain 1 202 318 - -
Stsc385g00008 556 CDD STKc_IRAK 249 515 - -
Stsc385g00008 556 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 207 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc385g00008 Stsc-Chr385 35372 37711 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc385g00008 168 530 Receptor kinase-like Gene Family AT4G23190 49.727 3.45e-126 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc385g00008 Pkinase 3.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc385g00008 - - aip:107610641 754.977