Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc385g00007 | ATGCCAATTTCCATCTTCACTTTCTCCTTCTTCTTTTACCTTCTTCTTCTTCTCTTCCCCATCTCCAAAACCATTGCAGCAAACAACACCATAACTCACTCCCAATCTCTAACCCAAAACCAGACCTTACTCTCCATCAACACAACCTTCAAACTTGGTTTCTTCACTCCCAACAACTCTAGAAACATCTACCTCGGAATATGGTACAACAATCTCCCTCTTCAAACTGTTGTATGGGTTGCAAACCGAGAGAATCCAATCACACCAACAAACATCTCTCCAGTTTTGAAGATAAACACCACACACAACAGCACCACACTTCTTCTCCTTCAGAACAACTCTCTTATATGGTCTACACCGCCGTCGAGGCTCGCTTCGAATCCGATTCTTCAGCTACTGGATTCAGGGAACCTTGTCCTGAGAGAGCAGGACGATGTGAATCAAGAGAACTATCTATGGCAGAGCTTTGATTACCCTTCTGACACGCTTCTTGCAGGGATGAAGCTTGGGAAGAACTTGAAAACCGGCTTGGATCGCCGCGTGACGGCGTGGAACACGGCGAATGATCCTTCTCTTGGAAACTTAACATGGAGGATGGAAGTTACAGCTTGGCCACATCCAATTCAAGCAGTTGGTTCTAAGAAACAATTCGACACCGGACCCTGGGATGGATTGGATTACAGCAGCAAACCAACCAGAATTAAACAACCAACTTTCGATTATGTCTATGTTTCCAATGAGGATGAAGTTTACTACATGTTCCACCTTGTGAACAAGTCTGTTCCAACAAGAATGGTGTTAGATCAAGCTAGCTTAAGCCGTTGGTATTCGGTTTGGGACTACGGTTTGCAACAATGGAAGGTCTATAACTCGCTGCCAAGAGACTTTTGCGAGCAGTATGGTGTTTGTGGACCAAATGGGAACTGTGATATGTCTAAGTTGCCTTCTCAGGCTTGTGATTGTTTGAGAGGGTTTAGGCCTAAGTCGCCGGAAGAATGGAATGGACAGAACCGTTCGGGCGGTTGCTTGCGTGACAAGCCTCTGAATTGTGGAAGTGATAAGTTTGTGAAGTATGGTAAGATGAAGGTTCCTGATACTGTGAATTGCTGGTACTTGAATCAAAGCATGAATCTTGAGGAGTGCAGAGAGAAGTGCTTGAGGAATTGTTCTTGTGTGGCTTATACTAATTCGGATATTCGAGGTGAAGGTAGTGGTTGTGCTTTGTGGTCTGGTGATCTTTATGATCTGAGGATTTTACCAGATGCAGGCCAAGATTTGTACATTAGAGTACCAGCTTCAGAGTTAGACACAAACAATGGACGCAAGGTCAAGATAGGAGTTGCAGTTGGAGTCACAGTTGGGGTATTATGTGGCCTACTCTTGGCTTTCTGTTTGATACGGAAAAGACGAAAAAGGGCTACTCTGAAAGCATTAAAGGATCATTCCAAGGAAGAACAAGAGGAGGACCCAGAGGTTCCATCCTATGACCTATCTGTTATAGCTTCTGCCACTGATAATTTTTCAGACAAAAACAAGCTTGGAGAAGGTGGTTTTGGACCTGTGTTTAAGGGAACATTAGAAAATGGACAAAGAATTGCAGTTAAGAGACTTTCAACTGGTTCTGGACAAGGGGTCAAGGAATTCAAGAATGAAATTGCATTGATAGCGAAACTTCAGCATCGTAATCTTGTAAAGCTTCATGGATATTGCATCCAGAACGAAGAGAAATTGCTTATATACGAATATATGCCTAATAAAAGTTTGGATTTCTTTATATTTGATGAAACACAAAGAATGGTATTGGATTGGCCAAGACGATTTAATATAATTGTCGGCATTGCAAGGGGTCTTCTCTATCTTCATCAAGATTCAAGACTTAGAATAATTCACCGAGATCTTAAAGCAAGTAATGTCTTACTTGACAACGAGATGAATCCCAAAATTTCAGACTTCGGATTGGCTAGAATTTTGGGTGGAGACCAAACCGCAGATTCCACACGTCGCGTGGTTGGAACTTATGGATACATCGCACCCGAATATGCTATAGATGGAAACTTTTCGATAAAATCAGACGTGTTTAGCTTTGGTGTGTTGTTGCTAGAGATAGTATCAGGAAGGAAGAACAGAGGAGATCCCAATCAAAAAGAAAGTACAAGCCTTATTGGACATGCATGGAATTTGTGGATAGAAGAGAGGCCATTGGAATTGGTAGGTGAATACCTGAGAGAATCATGCAATGCCTCAGAAGTATTGCGGTGCATTCATATTAGTTTTCTATGTCTGCAGCAGCATCCACATGACAGGCCAGAGATGTCATCTGTAATCTTGATGTTGGGTAGTGAAATTGGTTTGCCCAAGCCAAAACAACCAGCTCTATTTGTTAGAGAATATGCTGCTTCTACTACTAGTACTACTAAGGAGTATTCTTCATCAAACAAGAGTAATTTAGCTTCTGTCAATGAATTAAGTATCTCCAATTTAGAAGCTCGTTAG | 2493 | 0.4204 | MPISIFTFSFFFYLLLLLFPISKTIAANNTITHSQSLTQNQTLLSINTTFKLGFFTPNNSRNIYLGIWYNNLPLQTVVWVANRENPITPTNISPVLKINTTHNSTTLLLLQNNSLIWSTPPSRLASNPILQLLDSGNLVLREQDDVNQENYLWQSFDYPSDTLLAGMKLGKNLKTGLDRRVTAWNTANDPSLGNLTWRMEVTAWPHPIQAVGSKKQFDTGPWDGLDYSSKPTRIKQPTFDYVYVSNEDEVYYMFHLVNKSVPTRMVLDQASLSRWYSVWDYGLQQWKVYNSLPRDFCEQYGVCGPNGNCDMSKLPSQACDCLRGFRPKSPEEWNGQNRSGGCLRDKPLNCGSDKFVKYGKMKVPDTVNCWYLNQSMNLEECREKCLRNCSCVAYTNSDIRGEGSGCALWSGDLYDLRILPDAGQDLYIRVPASELDTNNGRKVKIGVAVGVTVGVLCGLLLAFCLIRKRRKRATLKALKDHSKEEQEEDPEVPSYDLSVIASATDNFSDKNKLGEGGFGPVFKGTLENGQRIAVKRLSTGSGQGVKEFKNEIALIAKLQHRNLVKLHGYCIQNEEKLLIYEYMPNKSLDFFIFDETQRMVLDWPRRFNIIVGIARGLLYLHQDSRLRIIHRDLKASNVLLDNEMNPKISDFGLARILGGDQTADSTRRVVGTYGYIAPEYAIDGNFSIKSDVFSFGVLLLEIVSGRKNRGDPNQKESTSLIGHAWNLWIEERPLELVGEYLRESCNASEVLRCIHISFLCLQQHPHDRPEMSSVILMLGSEIGLPKPKQPALFVREYAASTTSTTKEYSSSNKSNLASVNELSISNLEAR | 830 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc385g00007 | 830 | PIRSF | SRK | 1 | 830 | IPR024171 | GO:0004674 | |
| Stsc385g00007 | 830 | Gene3D | Transferase(Phosphotransferase) domain 1 | 583 | 783 | - | - | |
| Stsc385g00007 | 830 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 583 | 785 | - | - | |
| Stsc385g00007 | 830 | SUPERFAMILY | Protein kinase-like (PK-like) | 490 | 795 | IPR011009 | - | |
| Stsc385g00007 | 830 | Pfam | Protein tyrosine and serine/threonine kinase | 510 | 775 | IPR001245 | GO:0004672|GO:0006468 | |
| Stsc385g00007 | 830 | ProSiteProfiles | PAN/Apple domain profile. | 350 | 431 | IPR003609 | - | |
| Stsc385g00007 | 830 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 24 | 156 | - | - | |
| Stsc385g00007 | 830 | SMART | serkin_6 | 507 | 778 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc385g00007 | 830 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 628 | 640 | IPR008271 | GO:0004672|GO:0006468 | |
| Stsc385g00007 | 830 | CDD | STKc_IRAK | 513 | 778 | - | - | |
| Stsc385g00007 | 830 | CDD | PAN_AP_plant | 347 | 431 | - | - | |
| Stsc385g00007 | 830 | Coils | Coil | 468 | 488 | - | - | |
| Stsc385g00007 | 830 | CDD | B_lectin | 34 | 159 | IPR001480 | - | |
| Stsc385g00007 | 830 | PANTHER | BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN | 9 | 769 | - | - | |
| Stsc385g00007 | 830 | Pfam | PAN-like domain | 350 | 416 | IPR003609 | - | |
| Stsc385g00007 | 830 | Gene3D | Phosphorylase Kinase; domain 1 | 468 | 582 | - | - | |
| Stsc385g00007 | 830 | SMART | blect_4 | 34 | 159 | IPR001480 | - | |
| Stsc385g00007 | 830 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 | 472 | 582 | - | - | |
| Stsc385g00007 | 830 | ProSiteProfiles | Protein kinase domain profile. | 507 | 792 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc385g00007 | 830 | ProSiteProfiles | Bulb-type lectin domain profile. | 28 | 153 | IPR001480 | - | |
| Stsc385g00007 | 830 | Pfam | D-mannose binding lectin | 76 | 184 | IPR001480 | - | |
| Stsc385g00007 | 830 | ProSiteProfiles | EGF-like domain profile. | 293 | 331 | IPR000742 | - | |
| Stsc385g00007 | 830 | Gene3D | - | 22 | 156 | IPR036426 | - | |
| Stsc385g00007 | 830 | SMART | ntp_6 | 350 | 430 | IPR003609 | - | |
| Stsc385g00007 | 830 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 77 | 190 | IPR036426 | - | |
| Stsc385g00007 | 830 | Pfam | S-locus glycoprotein domain | 218 | 329 | IPR000858 | GO:0048544 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc385g00007 | Stsc-Chr385 | 29936 | 33248 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc385g00007 | 428 | 830 | Receptor kinase-like Gene Family | AT4G05200 | 48.775 | 7.90e-131 | 405 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_DLSV | Stsc385g00007 | PK_Tyr_Ser-Thr | 2.6e-47 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc385g00007 | - | - | ahf:112769120 | 1447.57 |