Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc385g00006 ATGGAAGTGCTCCTTAATTTCATCCTAATCAATCTCCATCTCCTCCTTCTTCTTGTTCTTGTCTCTGCTGATTCTTCTTCCTCCTCTTCCTCCGGGTTGAAAAATGATACCTTGTGTGACTTCTACGGATTTTGTGGAGCAAATGGGAACTGTGATCTTAATAACCCAAAACACTGTTCGTGTTTAGATGGTTTCACACCAAAGGACCCCACTTCCTATGATTCCTCTGACTTTAGATTGGGATGTGTTAAGAACAAAGCATGGAATTGCAGCACTGATGTCTTTGTTAGATACTCTCTTCTTCATGAACCAAATGGCACTTATTCTATGTTTGGAGGTGAAGATTGCAAGGGGAAGTGCTCTAGTAACTGTTCTTGCATAGCTTATGTTATAATTGGAAGTGGTGGATGCAAATTGTGGAGTGGTGATTTGTTTAATGTTAGGTTCGTTAATGGAGGAGGTCAAGATCTCTATATTAGAACACCAGCTTCAGATCAAGGGAAGAAAGATGGTGGAGGTGGAAATCAGGGTAGGAATGAAGGATTGGTGGTAGGAATAGTTGTTGGGAGCACTATAATTGTGATTTGTGGGATGATCGTGGCTTCTTGTTATTTTCTCAGAAAAAGGACACAGTCAAAAGAATTGGGACGTGCAAGGATAAATGAGATGGTTAGTCATAACATTCACACCAATGAACAAAAGGAAGATCTAGGGCTTCCATTATTTGATCTTGGAAGAATTGTTGTGGCCACAAGCAATTTCTCCCCAGACAATAAGCTTGGAGAAGGTGGTTTTGGCCCTGTATACAAGGGTATACTAGATGATGGACGACAAATTGCTGTAAAGAGACTCTCAAGTAGTTCTGGACAGGGCTTAAATGAATTTAAAACCGAAGTAAAACTAATAGCTAAACTTCAGCATCGTAATCTCGTAAAGCTTTTTGGATGTTGCATCCAAGAGAAAGAGAAGATGCTAATTTACGAATACATGCCTAATAGAAGTTTGGACTATTTTATTTTTGATCACTCGCAAAAGAATGTTTTGGACTGGCCTAAGCTCTTTAATATTATTTGTGGAATTGCTAGAGGCTTACTCTATCTTCATCAAGATTCAAGGCTGAGAATTATCCATAGAGATCTTAAAGCGAGTAATATTTTGCTAGACAGTAAGTTGGGTCCCAAAATATCAGATTTTGGTTTAGCTAGAAGTTTTGGAGGGGATCAAAGCAACGTAAATACAAATAGAGTCGTCGGAACTTTCGGATATATGGCTCCAGAATATGCTGTTAACGGACAATTTTCAGTAAAATCGGATGTCTTTAGCTTCGGAATTTTATTATTAGAAATTGTGTCCGGAAAGAGAAACAAAAAATTTTATTATGCAAATAACGACGATAGCTTATATGGACATGCATGGGAGTTATGGAAGCAAGGAAGGTCATTAGAGCTTGTGGATGAAAGCCTCAAAGATTCATGGAATTTGAGTGAAGTACAGCGTTGTATCCACATTGGTCTCCTTTGTGCACAACAATATCCCCATGATAGACCAACCATGTCTTCTGTGGTTCTAATGTTGGGAAGTGAGTTTGATTTGCCTCAACCTGAAATTCCTACATTTTTCATTGTTGAACCTTTTGATGCTTCAAGCTCCTCAACTGGTAAAAATGACTTGAGTATTACGGAGATGGAAGCTCGATAA 1698 0.3869 MEVLLNFILINLHLLLLLVLVSADSSSSSSSGLKNDTLCDFYGFCGANGNCDLNNPKHCSCLDGFTPKDPTSYDSSDFRLGCVKNKAWNCSTDVFVRYSLLHEPNGTYSMFGGEDCKGKCSSNCSCIAYVIIGSGGCKLWSGDLFNVRFVNGGGQDLYIRTPASDQGKKDGGGGNQGRNEGLVVGIVVGSTIIVICGMIVASCYFLRKRTQSKELGRARINEMVSHNIHTNEQKEDLGLPLFDLGRIVVATSNFSPDNKLGEGGFGPVYKGILDDGRQIAVKRLSSSSGQGLNEFKTEVKLIAKLQHRNLVKLFGCCIQEKEKMLIYEYMPNRSLDYFIFDHSQKNVLDWPKLFNIICGIARGLLYLHQDSRLRIIHRDLKASNILLDSKLGPKISDFGLARSFGGDQSNVNTNRVVGTFGYMAPEYAVNGQFSVKSDVFSFGILLLEIVSGKRNKKFYYANNDDSLYGHAWELWKQGRSLELVDESLKDSWNLSEVQRCIHIGLLCAQQYPHDRPTMSSVVLMLGSEFDLPQPEIPTFFIVEPFDASSSSTGKNDLSITEMEAR 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc385g00006 565 Gene3D Phosphorylase Kinase; domain 1 214 329 - -
Stsc385g00006 565 Pfam S-locus glycoprotein domain 35 68 IPR000858 GO:0048544
Stsc385g00006 565 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 330 533 - -
Stsc385g00006 565 CDD PAN_AP_plant 80 162 - -
Stsc385g00006 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672|GO:0006468
Stsc385g00006 565 SMART serkin_6 254 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc385g00006 565 ProSiteProfiles PAN/Apple domain profile. 90 162 IPR003609 -
Stsc385g00006 565 Gene3D Transferase(Phosphotransferase) domain 1 330 531 - -
Stsc385g00006 565 ProSiteProfiles Protein kinase domain profile. 254 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc385g00006 565 SMART ntp_6 90 161 IPR003609 -
Stsc385g00006 565 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 218 329 - -
Stsc385g00006 565 CDD STKc_IRAK 260 525 - -
Stsc385g00006 565 Pfam Protein tyrosine and serine/threonine kinase 257 523 IPR001245 GO:0004672|GO:0006468
Stsc385g00006 565 SUPERFAMILY Protein kinase-like (PK-like) 238 547 IPR011009 -
Stsc385g00006 565 Pfam PAN-like domain 90 147 IPR003609 -
Stsc385g00006 565 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 47 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc385g00006 Stsc-Chr385 20252 23353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc385g00006 182 539 Receptor kinase-like Gene Family AT4G23230 54.039 1.58e-125 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc385g00006 PK_Tyr_Ser-Thr 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc385g00006 - - aip:107610641 952.97