Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc385g00005 ATGAAGACCTTTCATCGCTTTGTAACAATCATTCTCCACCTTTTTCTCTATTTTCTTCTCTCCAAAACCATACCTGCAACTGCAACTGATACCTTAACTCAGTTTCAGTCTCTAACTGAAAACCAAACATTAGTTTCCAACAATGGAGACTTTGAACTTGGTTTCTTCACTCTTGATGATAACTCTACCAACAACCCTTATTACCTTGGCATTTGGTACAAGAACATCCCAATCAGAACCATAGTATGGGTTGCAAATCGTGAAAAACCTTCCACAGATCACAACTCTCTTGTGTTGCTGATACACAACACAGCAAACAACACAATTCTCCTTACTCAGAACAACAAAAGCACTGTTCTATGGTCTGTGAGTATATCAAGAAAACCCAAGAATCCAATTCTACACCTCTTGGATTCAGGGAACCTTGTTCTGAGAGAAGAAAATGATGATGTTAATGACGAGAAGAACTATCTATGGCAAAGTTTTGATTACCCTGGTGATACTCTCTTGCCAGGGATGAAGCTTGGGAAGGATTTAAGGACTGGTTTTGATAGGCGGGTAACGGCGTGGAAGAATGATAATGATCCTTCTCCAGGAACCTTGAATTGGTTTATGGAAGTTAACAATTGGCCTGAACCGATGCAGAGAATTGAAACAATGAAGCAGTACAATAGTGGTCCTTGGAATGGAGTTCAATACAGTGGGAAACCAACCAACAAGCCTAGCCCGGCTTTCGAGTTCATCTACTTTGCTGATGAGAGCCAAGTTTATTACATGTTTAGACTTGTTAACAACTCTGTCAAAGCTAGGATGGTGCTGAACCAAACCACAAACAAGATTCTGCAACTTGTGTGGACACAAGGTGTTTGGAAGATGTATGGTTCCATGCCAAGGGATTTTTGTGATGAGTATGGTGCTTGTGGTCCTAATGGGAAATGTGACATGGCTGAGTCCCCAAATTCTTGTGAATGTTTGAGAGGGTACAGGCCTAAGTCACCAAAAGAATGGAGTGGAATGAATTATGAAGGAGGTTGCTTGCGCGACAAGCCACTGAATTGCGAAGGCGATGGGTTTATCAAGTATGTTAAGATGAAAGTGCCTGATACTGAGAATTGTTGGTACTTGAATCAGAGTATGAGCTTGGCTGAGTGCAGAGATGAGTGCTTGAGTAATTGTTCTTGTATGGCCTATGTGAATTCGGATATTCGAGGTGAAGGCAATGGTTGTGCTTTGTGGTTTGGTGATCTTAATGATTTGAGAGTTCAACCAAGTGCAGGGCAAGATCTTTATGTTAGAGTTCCTGCTTCAGAGTTAGAGACAAGCAATGGAAGCAAGGTCAAGATAGGAATTGCAGTTGGATGCACTATTATTGTTGTGTTATGCAGCTTGATCTTAGTTCTCTACTTCACTTACATTAGAAGAAGAAGAGGCAAGAGAAAAAGGAATGCAGCAATAATGGATAGTTTCATTGAAGAACAAGAGGGGCATCTAGAGCTTCCATTGTTTGATCTATCTAGTTTAGCTAATGCCACTGGTAACTTCTCAATTAATAACAAGGTTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGATTATTGAGAAATGGGCAACAAATTGCTGTCAAAAGACTTTCAAGAGGTTCTGTACAAGGGCTCAAAGAATTTAAGAATGAAATTGCTTTGATTGTCAAACTTCAACATCGAAATCTGGTGAAGCTTCATGGATGTTGCATTCACAATGAAGAGAAACTGCTTGTATATGAATACATGCCCAACAAAAGTTTGGATTTCTTCATATTTGATCAAACACAGAGAAAGCTCTTAGATTGGCCGAAGTGCTTCCATATGATTTTGGGGATTGGAAAGGGTCTTCTTTATCTTCATCGAGATTCAAGACTTAGAATAATTCACAGAGATCTTAAAGCAAGTAATATCTTACTTGATAATGAAATGAATCCCAAGATTTCAGATTTTGGCATGGCTAGAATTCTGGGAGGAGACCAAATCACAGCAACAACGCGACGAGTGGTTGGAACATATGGATATATGGCACCAGAATATGCGATAGACGGGAACTTCTCAGTAAAATCGGATGTCTTTAGCTTTGGCGTTTTGTTACTAGAGATGCTATCCGGAAAGAAAAACAAAGGAAATCATTCGGAAAGTGAGAGCAGAGACCTTATTGGCTATGCATGGGATTTGTGGACAGAAGAAAGGGCTCTAGAACTTGTTGATGATATCCTAAAGGAGTCTTGTAATAACCTCTCTGAAGTATTGAGGTGCATTCAGATTAGTCTTCTTTGTTTGGAGCAGCATCCATATGACAGACCAGACATGTCATCGGTGATTATGATGTTTGGTAGTGAAATTGCCTTGCCTAAGCCAAAGCAACCAGCTCTGTTTGTTGGAGAATATTCATATCAATATGACGATTTTGACAATGAATTAAGTATCACAGCTTTAGAAGCCAGATAA 2475 0.3988 MKTFHRFVTIILHLFLYFLLSKTIPATATDTLTQFQSLTENQTLVSNNGDFELGFFTLDDNSTNNPYYLGIWYKNIPIRTIVWVANREKPSTDHNSLVLLIHNTANNTILLTQNNKSTVLWSVSISRKPKNPILHLLDSGNLVLREENDDVNDEKNYLWQSFDYPGDTLLPGMKLGKDLRTGFDRRVTAWKNDNDPSPGTLNWFMEVNNWPEPMQRIETMKQYNSGPWNGVQYSGKPTNKPSPAFEFIYFADESQVYYMFRLVNNSVKARMVLNQTTNKILQLVWTQGVWKMYGSMPRDFCDEYGACGPNGKCDMAESPNSCECLRGYRPKSPKEWSGMNYEGGCLRDKPLNCEGDGFIKYVKMKVPDTENCWYLNQSMSLAECRDECLSNCSCMAYVNSDIRGEGNGCALWFGDLNDLRVQPSAGQDLYVRVPASELETSNGSKVKIGIAVGCTIIVVLCSLILVLYFTYIRRRRGKRKRNAAIMDSFIEEQEGHLELPLFDLSSLANATGNFSINNKVGEGGFGPVYKGLLRNGQQIAVKRLSRGSVQGLKEFKNEIALIVKLQHRNLVKLHGCCIHNEEKLLVYEYMPNKSLDFFIFDQTQRKLLDWPKCFHMILGIGKGLLYLHRDSRLRIIHRDLKASNILLDNEMNPKISDFGMARILGGDQITATTRRVVGTYGYMAPEYAIDGNFSVKSDVFSFGVLLLEMLSGKKNKGNHSESESRDLIGYAWDLWTEERALELVDDILKESCNNLSEVLRCIQISLLCLEQHPYDRPDMSSVIMMFGSEIALPKPKQPALFVGEYSYQYDDFDNELSITALEAR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc385g00005 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 478 589 - -
Stsc385g00005 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 196 IPR036426 -
Stsc385g00005 824 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 776 - -
Stsc385g00005 824 Gene3D Phosphorylase Kinase; domain 1 474 589 - -
Stsc385g00005 824 Pfam Protein tyrosine and serine/threonine kinase 515 783 IPR001245 GO:0004672|GO:0006468
Stsc385g00005 824 FunFam Receptor-like serine/threonine-protein kinase SD1-8 24 162 - -
Stsc385g00005 824 PIRSF SRK 1 823 IPR024171 GO:0004674
Stsc385g00005 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Stsc385g00005 824 SMART blect_4 35 165 IPR001480 -
Stsc385g00005 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 590 794 - -
Stsc385g00005 824 CDD STKc_IRAK 520 786 - -
Stsc385g00005 824 CDD B_lectin 36 165 IPR001480 -
Stsc385g00005 824 Pfam S-locus glycoprotein domain 223 332 IPR000858 GO:0048544
Stsc385g00005 824 Pfam PAN-like domain 353 419 IPR003609 -
Stsc385g00005 824 ProSiteProfiles Protein kinase domain profile. 514 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc385g00005 824 SUPERFAMILY Protein kinase-like (PK-like) 498 801 IPR011009 -
Stsc385g00005 824 ProSiteProfiles PAN/Apple domain profile. 353 434 IPR003609 -
Stsc385g00005 824 Gene3D Transferase(Phosphotransferase) domain 1 590 792 - -
Stsc385g00005 824 Pfam D-mannose binding lectin 80 191 IPR001480 -
Stsc385g00005 824 CDD PAN_AP_plant 350 434 - -
Stsc385g00005 824 Gene3D - 24 162 IPR036426 -
Stsc385g00005 824 SMART ntp_6 353 433 IPR003609 -
Stsc385g00005 824 ProSiteProfiles Bulb-type lectin domain profile. 29 157 IPR001480 -
Stsc385g00005 824 SMART serkin_6 514 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc385g00005 824 ProSiteProfiles EGF-like domain profile. 297 334 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc385g00005 Stsc-Chr385 14860 18029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc385g00005 433 802 Receptor kinase-like Gene Family AT4G05200 49.865 6.66e-118 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc385g00005 PK_Tyr_Ser-Thr 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc385g00005 - - aip:107610641 1500.72