Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc385g00003 ATGGACCTGCTTCTCCTCACTCTTCATCTTCTTCTTCTCTTTCCCTTCACAACATCACAACAACAGAACCAAAATTATTACCCTTCTTCTTCTGTGACACTCAGAAACGATACCTACTGTGACTACCCTTCAGTTTGTGGACCAAATGGCAACTGTGACATTAATCAGTCACCAGCATGTTTCTGTTTGGATGGTTTCACACCTAAGTCACCCAGTGGTTACAGTTCAATGGATTATACACAGGGTTGTGTTAGAAAAGTAGCCTTGAATTGTAGCACTGATGTTTTTGTTGCCTATACTGTGTTTAAGGAACCAAGTGGTAACTACACTTTGTTGAATCAAAGCTTGGGTGATCATGGTTGCAAGGGAAAGTGTAAGAGTAATTGTTCTTGCACAGGTTATTCTGTAACTACTGGTGGTGGATGCAAATTGTGGAGTGGTGATTTGTGTGATGTTAGATTGGTTAAGGATGGAGGTGAAGTTCTTTATATTCGAATGTCAGCTTCTGATGAAAACGAATCTGGATGGGGGAATCACAAGAAGAATGTTGGAATAATAGTAGGAAGCACTGTTGCTGCAATTTTTGGAATGATAATGATATTGGCCTGTTGTTACATGTTAAGAAAAAGAAGAACAAAGTTACAAGATATTTCATTGAGGACTAGTGAGATTGCTGATCAACTCAAAGGATATGAAGAAGGAGATATAGAGCTTCCATTTCTAGACCTATCAAGAATAGTTGAGGCCACTGATAATTTTTCAATGGAAAACAAATTAGGGGAAGGTGGTTTTGGACCTGTGTACAAGGGGACATTCGATGATGGTCGACAAATCGCGGTGAAAAAGCTTTCGAGTAGTTCCGGGCAGGGGATAAATGAATTCAAGAATGAAGTGCTACTAATAGCTAAACTCCAGCATCGTAATCTTGTGAAGCTTTTGGGATGTTGCATTCAAGATGAAGAGAAACTGCTGATATATGAATACATGCCTAATAGAAGCTTAGACTTTTTTATTTTTGATCAGACAAGGCGAAAACTATTGGATTGGCCTAAGCGTTTCAACATCATTTGTGGGATTTCTAGAGGCCTACTTTATCTTCACGAGGATTCTAGATTGAGAATTATACATAGAGATCTCAAAGCAAGTAATATCTTACTAGACAGCGAGATGAATCCAAAGATATCTGACTTTGGTTTGGCTCGATGTTTCGGAGGAGATCAAAGCAAGGCAAATACGAAGAAAATAGTAGGAACTTTTGGATATATGGCCCCAGAATATGCTATTAGCGGACACTTCTCAGTAAAATCGGATGTGTTTAGTTTCGGGATTTTGTTGCTTGAGATAATCACAGGGAGAAAAAATAGAGGGATATATTTTCCAAGTGACAATGTCAATCTATATGGACATGCATGGGATCTATGGAAGCAAGGAAGGTCCTTAGAACTTGTTGATGAATGGCTTAAGGAGTCATGGAATTCGTCGGAAGCGCAGCGGTGCATCCACATTTGCCTGCTATGCGCGCAGCAGCATCCGCAAGATAGGCCGGACATGTCATCTGTGGTTCTGATGCTGGGAAGCGAAATCGATTTGCCTCAACCAAAGTTTCCTACCTTCATCATTGGTGGAAATTCTGATGGCAGAAGTTCTTCCTCTTGTCAAAATGAAATAAGCATTACAGAGGTGGCACCAAGATAA 1695 0.4006 MDLLLLTLHLLLLFPFTTSQQQNQNYYPSSSVTLRNDTYCDYPSVCGPNGNCDINQSPACFCLDGFTPKSPSGYSSMDYTQGCVRKVALNCSTDVFVAYTVFKEPSGNYTLLNQSLGDHGCKGKCKSNCSCTGYSVTTGGGCKLWSGDLCDVRLVKDGGEVLYIRMSASDENESGWGNHKKNVGIIVGSTVAAIFGMIMILACCYMLRKRRTKLQDISLRTSEIADQLKGYEEGDIELPFLDLSRIVEATDNFSMENKLGEGGFGPVYKGTFDDGRQIAVKKLSSSSGQGINEFKNEVLLIAKLQHRNLVKLLGCCIQDEEKLLIYEYMPNRSLDFFIFDQTRRKLLDWPKRFNIICGISRGLLYLHEDSRLRIIHRDLKASNILLDSEMNPKISDFGLARCFGGDQSKANTKKIVGTFGYMAPEYAISGHFSVKSDVFSFGILLLEIITGRKNRGIYFPSDNVNLYGHAWDLWKQGRSLELVDEWLKESWNSSEAQRCIHICLLCAQQHPQDRPDMSSVVLMLGSEIDLPQPKFPTFIIGGNSDGRSSSSCQNEISITEVAPR 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc385g00003 564 Pfam Protein tyrosine and serine/threonine kinase 254 522 IPR001245 GO:0004672|GO:0006468
Stsc385g00003 564 CDD STKc_IRAK 259 524 - -
Stsc385g00003 564 MobiDBLite consensus disorder prediction 544 564 - -
Stsc385g00003 564 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 39 548 - -
Stsc385g00003 564 ProSiteProfiles PAN/Apple domain profile. 91 167 IPR003609 -
Stsc385g00003 564 Pfam PAN-like domain 91 152 IPR003609 -
Stsc385g00003 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Stsc385g00003 564 MobiDBLite consensus disorder prediction 544 558 - -
Stsc385g00003 564 SMART serkin_6 253 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc385g00003 564 SMART ntp_6 91 166 IPR003609 -
Stsc385g00003 564 Gene3D Transferase(Phosphotransferase) domain 1 329 530 - -
Stsc385g00003 564 Pfam S-locus glycoprotein domain 35 70 IPR000858 GO:0048544
Stsc385g00003 564 Gene3D Phosphorylase Kinase; domain 1 215 328 - -
Stsc385g00003 564 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 218 328 - -
Stsc385g00003 564 ProSiteProfiles Protein kinase domain profile. 253 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc385g00003 564 CDD PAN_AP_plant 87 165 - -
Stsc385g00003 564 SUPERFAMILY Protein kinase-like (PK-like) 238 524 IPR011009 -
Stsc385g00003 564 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 329 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc385g00003 Stsc-Chr385 7546 10021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc385g00003 246 564 Receptor kinase-like Gene Family AT4G11530 56.928 3.55e-130 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc385g00003 PK_Tyr_Ser-Thr 6.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc385g00003 - - adu:107462470 778.474