Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc37g00018 ATGCAAAAGGAAAAGGAAGCAATCACCACCAAGAATAAGGAGGGGAGTAATAATAATAATATGAAGGAGATAGAAATAATGGAAGGTGTGCATGGTGGTGGTGGAAAGGAGGAAACCCTACCGCCGGGTTTCCGATTTCATCCGACCGATGAAGAACTAATCACTTGCTATCTCGTAAACAAGATCTCGGATTCGAATTTTACAGGAAGGGCTATAACTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTTCCAGGGAAGGCGAAGATGGGAGAGAAAGAATGGTACTTCTTCAGCCTGAGGGACCGTAAGTACCCGACCGGGGTGCGGACGAACCGAGCCACAAACACCGGGTACTGGAAGACCACCGGAAAAGACAAAGAGATCCTTAACAGTGTTACATCGGAGCTGGTTGGGATGAAGAAGACTTTGGTTTTCTACAAAGGAAGAGCTCCCAGGGGAGAGAAGAGTAACTGGGTCATGCATGAATATCGCATTCATTCTAAATCAGCCTTTCGAACTAGCAAGCAGGATGAATGGGTGGTTTGCCGAGTGTTCCAGAAGAGTGCCGGTGTAAAGAAGTACCCTTCTTCCAACCATGCAAGTAGGGCAATGAACCCTTTCAACCTTGAAATAGGTCACCACAACATTGTGACACCGCCGCCGATGATGCAGCTCGGAGACCCTGCGACTGCTCATTTCCTCTACGGCGGAAGGAACTACATGAACACCGCAGAGTTAGCCGAAGTAGCTAGGGTTTTGCGTGGTGGTACTGGTTCAACTAGTACTATTAACCTGCCTCCGATGCAGCCTCAGATGAACTATCCAGTGACTGCTTCAGGAGCCGGTTTCACAATTTCAGGGCTAAATTTGAATTTAGGAGGCGGAGGAGCCGGAACAGCATCGGTCACAACACAACCAGTTTTGCGGCCAATGCAGGCAACTCCTCCGTCGCAAACAATGGGAATGGTTTCTCATCATCACCAAGTTCATCATGATGTGAGTTCCAACATGATTTCAACAAATTCTATTGGAGCTGAGAATGTGGGTTATGTTACTGAAATAAGCAACACAAATAATGGTGGTCATGGAAATAGGTATTTGGGAATGGATCATTGCATGGATCTTGATAGTTACTGGCCTTCCTACTGA 1155 0.4684 MQKEKEAITTKNKEGSNNNNMKEIEIMEGVHGGGGKEETLPPGFRFHPTDEELITCYLVNKISDSNFTGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSAFRTSKQDEWVVCRVFQKSAGVKKYPSSNHASRAMNPFNLEIGHHNIVTPPPMMQLGDPATAHFLYGGRNYMNTAELAEVARVLRGGTGSTSTINLPPMQPQMNYPVTASGAGFTISGLNLNLGGGGAGTASVTTQPVLRPMQATPPSQTMGMVSHHHQVHHDVSSNMISTNSIGAENVGYVTEISNTNNGGHGNRYLGMDHCMDLDSYWPSY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc37g00018 384 Pfam No apical meristem (NAM) protein 41 167 IPR003441 GO:0003677|GO:0006355
Stsc37g00018 384 SUPERFAMILY NAC domain 38 189 IPR036093 GO:0003677|GO:0006355
Stsc37g00018 384 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 37 303 - -
Stsc37g00018 384 Gene3D NAC domain 49 193 IPR036093 GO:0003677|GO:0006355
Stsc37g00018 384 ProSiteProfiles NAC domain profile. 40 189 IPR003441 GO:0003677|GO:0006355
Stsc37g00018 384 FunFam NAC domain-containing protein 100-like 49 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc37g00018 Stsc-Chr37 168468 171990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc37g00018 36 384 NAC Transcription Factor Family AT2G24430 53.782 4.48e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc37g00018 NAM 5.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc37g00018 - - gmx:100804931 519.62