Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc377g00006 ATGAGGAATTCCCGCATGGAACTTGGGAGGCCTGCCTCAGGTAAAAGAAGATTGAAAGATTTATTGCTTCAGGAGGATAATCGTGTTTGTGCTGATTGTAGTGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTATTTATTTGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTTCTCATATATCAAAGGTTCTATCTGTGACCTTGGACGAATGGACAGAAGAAGAAATTGATTCAATGACTGAAGTTGGGGGGAATGCTGTTGCTAATTCAATATATGAGGCTTATATTCCTGAAGGACGTAAAAAACCTACACCAGATGCCAGCCATGAAGAGCGTGCAAGTTTTATAGTGTCAAAGTATGAGACTCAAGAATTTTTGAAACCCGGCTTGCGCATTGTGTCTGGGAAAACCAATACAGATTCAAACCCCACAAAAACTCGCACCGATGGTGGGAGTTCACAGAGAACGGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAGAGGCACCAATTTAGCTATTAGAGATATAAAGACAAGTGATCCATATGTTATTTTGAACCTTGGCACACAGACTTCCCAGACAAGTGTAATATCGAGCAACTTGAATCCAGTCTGGAATGAAGAAATTATGTTGTCTGTTCCTGAATCATATGGACCATTGAAATTGACAGTGTTTGATTATGATACATTTTCTGCTGACGACATAATGGGAGATGCAGACATCGACATTCAGCCGCTGATATCATCTGCCATGGCATGTGGTAATGCAGCAATGTTTGCCAATATGCAGATAGGAAAATGGTTAAAAACTAATAACAATGCACTTGTTGAAGATAGTATAGTCAATATTGTTGATGGGAAGGTTATACAGGCCATGACACTAAAGCTCCAGAATGTTGAATGTGGAGAAATAGACCTAGAAATTGAGTGGATTCCTCTTGATCAATAG 975 0.4 MRNSRMELGRPASGKRRLKDLLLQEDNRVCADCSAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWTEEEIDSMTEVGGNAVANSIYEAYIPEGRKKPTPDASHEERASFIVSKYETQEFLKPGLRIVSGKTNTDSNPTKTRTDGGSSQRTEGMVEFIGMLKVKVIRGTNLAIRDIKTSDPYVILNLGTQTSQTSVISSNLNPVWNEEIMLSVPESYGPLKLTVFDYDTFSADDIMGDADIDIQPLISSAMACGNAAMFANMQIGKWLKTNNNALVEDSIVNIVDGKVIQAMTLKLQNVECGEIDLEIEWIPLDQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc377g00006 324 Gene3D Arf GTPase activating protein 3 134 IPR038508 -
Stsc377g00006 324 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Stsc377g00006 324 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Stsc377g00006 324 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Stsc377g00006 324 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Stsc377g00006 324 ProSiteProfiles C2 domain profile. 153 265 IPR000008 -
Stsc377g00006 324 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 166 324 - -
Stsc377g00006 324 Pfam C2 domain 169 261 IPR000008 -
Stsc377g00006 324 SUPERFAMILY ArfGap/RecO-like zinc finger 15 131 IPR037278 -
Stsc377g00006 324 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 166 322 IPR035892 -
Stsc377g00006 324 MobiDBLite consensus disorder prediction 137 158 - -
Stsc377g00006 324 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Stsc377g00006 324 CDD ArfGap 18 124 - -
Stsc377g00006 324 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096
Stsc377g00006 324 Gene3D C2 domain 166 324 IPR035892 -
Stsc377g00006 324 SMART C2_3c 169 264 IPR000008 -
Stsc377g00006 324 MobiDBLite consensus disorder prediction 138 158 - -
Stsc377g00006 324 SMART arf_gap_3 15 137 IPR001164 GO:0005096
Stsc377g00006 324 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 6 324 IPR044518 GO:0005096|GO:0005543
Stsc377g00006 324 CDD C2_ArfGAP 167 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc377g00006 Stsc-Chr377 33001 37644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc377g00006 1 324 C2H2 Transcription Factor Family AT4G21160 67.359 5.17e-174 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc377g00006 K12486 - gmx:100810806 493.426