Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc377g00005 ATGGCTAATCACTATTCTCAGTCTCATATATGCCAATGTTTGAGTCGCTTGCTCACTCTCCGGCCACATTTTCCGGTCACAATTGCCGGTGACCGGAGAAAGACTGGCCGAGAGTTTGTGGAGCAAGTTTTGGCCTTGGCTCAAGGCTTGCTTGACCTAGGTGTCACAGCCGGGGATGTAATTGCGATCTCTGCATTCAACAGTGATTGGTATCTGGAGTGGTTGTTAGCCATTGCATTTGTTGGTGGAATAGTTGCGCCTCTCAACTATCGCTGGAGTTTTGAAGAGGCGAGATTTGCAATGAATGTGGTGAAGCCGGTGATGTTAGTCACTGACGAGAGCAGCCAAACTTGGTACTCGAAACTCCTGAAAACTGATTTTCCATCTCTGAGATGGTATGCTTTGTTGGATTCCCCTTCCTCAGATTTCGCAAAGGAGTTGAATGGAATAGATGTGTTGCACTCAGAAATGCTTAAGAAGCATCGCGAAAAGCCTCAGCTGTTTGATTATTCCTGGGCGCCGGACTGTGCTGTTCTGATTTGCTTTACTTCAGGAACAACAGGAAAGCCTAAAGGAGTTACACTAAGCCATGGAGCATTGATCATACAATCACTAGCAAAGATTGCCATAGTTGGATACAATGAGGATGATGTTTATCTGCATACTACTCCATTATGCCATATTGGGGGCTTGTCATCAGCTCTGACCATGCTTATGGTTGGAGGTTGCCATGTCTTGACGCCGAAATTCGATCCAAAATCGGCTGTTGATGCCATAGAACGATATGATGTGACATCTCTGATCACAGTTCCTGCAATAATGGCCAATCTCATTTCTCTAATTAGGCACAAAGAGAAATGGATAGGGGGAGAAACTGTGAAGAAAATACTTAATGGGGGTGGAAGCCTCTCACTTGAGCTAATCAGGGATACTAACTTATTCTTCCACAAAGCTAAGCTTATCTCAGCTTATGGGATGACAGAGACATGTTCTTCAATGACATTCATGACCCTTTATGATCCAATGCATGAAACCAGCATTAGCCAGAACCTTCAAATAGTTGGTGAGGCAGCATCATCAAATTCAATTTACCAGCCTCAAGGTATCTGTGTTGGCAAAGCTGCACCTCATGTAGAACTCAAAATATGTGAGGATGACAGCACTCGTCACATAGGTAGAATTTTAACTAGAGGGCCACACACAATGCTCAGGTACTGGGATCAGACTCTCACAAATTCATCAAATGCCAGGAGTGAAGCATGGTTTGATACAGGTGACATTGGATCAATTGATAATCATGGTAATTTGTGGCTCCTCGGACGAACAAATGGTCGAATCAAGAGTGGTGGGGAGAACATTTACCCTGAAGAGGTTGAAGCAATTCTACAAGGACACCCAGGCATTGCAGGTGTTGTTGTTGTAGGAATCCCAGATGCCTATCTTACAGAAATGGTAGCAGCATGTATCAAACTAACAGAAAATTGGCAATGGTTAGAGGAATCTAATTATTCAAATCAAGAGTTTCACATATCTTCAAAGAGTCTCCACCAATATTGTATTCAACATAATCTAAGCAGGTTTAAGATACCAAAGATGTTTGTTTTGTGGAGGAAGCCTTTTCCACTTACTACAACAGGAAAAGTAAGAAGAGACCAAATCCGCAAGGAGTTAATGTGTCTGCCACAATCTTTGCATAGTAATCTTTGA 1707 0.4294 MANHYSQSHICQCLSRLLTLRPHFPVTIAGDRRKTGREFVEQVLALAQGLLDLGVTAGDVIAISAFNSDWYLEWLLAIAFVGGIVAPLNYRWSFEEARFAMNVVKPVMLVTDESSQTWYSKLLKTDFPSLRWYALLDSPSSDFAKELNGIDVLHSEMLKKHREKPQLFDYSWAPDCAVLICFTSGTTGKPKGVTLSHGALIIQSLAKIAIVGYNEDDVYLHTTPLCHIGGLSSALTMLMVGGCHVLTPKFDPKSAVDAIERYDVTSLITVPAIMANLISLIRHKEKWIGGETVKKILNGGGSLSLELIRDTNLFFHKAKLISAYGMTETCSSMTFMTLYDPMHETSISQNLQIVGEAASSNSIYQPQGICVGKAAPHVELKICEDDSTRHIGRILTRGPHTMLRYWDQTLTNSSNARSEAWFDTGDIGSIDNHGNLWLLGRTNGRIKSGGENIYPEEVEAILQGHPGIAGVVVVGIPDAYLTEMVAACIKLTENWQWLEESNYSNQEFHISSKSLHQYCIQHNLSRFKIPKMFVLWRKPFPLTTTGKVRRDQIRKELMCLPQSLHSNL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc377g00005 568 Gene3D - 444 559 IPR045851 -
Stsc377g00005 568 Pfam AMP-binding enzyme C-terminal domain 457 547 IPR025110 -
Stsc377g00005 568 CDD AFD_class_I 175 549 - -
Stsc377g00005 568 ProSitePatterns Putative AMP-binding domain signature. 180 191 IPR020845 -
Stsc377g00005 568 Pfam AMP-binding enzyme 24 448 IPR000873 -
Stsc377g00005 568 Gene3D - 1 443 IPR042099 -
Stsc377g00005 568 PANTHER ACYL-COA SYNTHETASE 6 559 - -
Stsc377g00005 568 SUPERFAMILY Acetyl-CoA synthetase-like 9 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc377g00005 Stsc-Chr377 29344 32302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc377g00005 46 475 Monolignol Biosynthesis Gene Families AT3G21240 28.864 2.61e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc377g00005 K14760 - gmx:100809925 862.448