Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc377g00003 ATGGAGACTATGTATAGATTGAATGTTGGTGGTCCTGAGATTCAACCTGATCAAGATCCTGATCTTTGGAGAAGTTGGGAAATGGATTCTCACTATATGATCACTGAAAATGCTGGGATAGGAATTAAAAACACTTCCAATATCACTTATGCTTCTGTGAATGATACTTCAGTGGCTCCTCTACTTGTATATGAAACTGCAAGGGCAATGTCAAACACAGAAGTCTTGGACAAGAGATTTAACATGTCCTGGAAATTCGAAGTGGATCCCGATTTTGATTATTTGGTCCGGTTACATTTCTGCGAGTTGGTTTATGATAAGGCGAACGAGAGGATTTTCAAGATCTACATAAATAACAGGACTGCTGCAGATAATGTTGATGTTTATGTTCAAGCAGGTGGGAAGAATAAAGCATATCACGTGGACTATTTCGATGCCATGTCCTCGAGCATTGATACACTATGGGTTCAACTAGGTCCTGATGCAGGTGCTGGTGCTGCGGGAACTGATGCTCTCTTGAATGGACTAGAGATCTTCAAGCTTAGTCGAAATGGGAACCTAGCATATGTGGATAAACATGACTCAGTTGGCAATGCAGCAAGCAAATCAAAAGTTCTTTGGGTTGGAATTGGAGCAGGTCTAGCTTCTATTGCTGTAATTGCTGTTATAGTTGTTCTTGTTTTCTGTTTCTGCAGAAGCTGGCAGAACAAATCAAGTGACACCAAAAACAACTCTCCTGGTTGGCGACCTTTGTTCCTCGTTGGGGCCACTGTGAACAGCACCATGGCCGCGAAGGGATCATCAGGAAGTCAAAAAGCATATGGATCTGTGGTCTCAACAAGAGCTGGCAAGCACTTTACATTGGCTGAAATCATTGCTGCAACAAAAAATTTTGATGAGAGCTTGGTAATTGGAGTTGGAGGCTTTGGTAAGGTGTACAAGGGGGAGATTGACGGTGGTGTCCTTGCTGCAATCAAGCGAGCCAACCCGCAATCTGAGCAAGGCTTGGCCGAATTTGAGACAGAAATTGAGATGCTCTCCAAACTCAGGCATAGGCATCTTGTTTCCTTGATTGGTTTCTGCGAAGAAAAAAACGAAATGATTCTGGTTTATGAGTATATGTCCAATGGAACTCTTAGAAGCCACTTGTTTGGGAGTGATCTTCCTCCATTAACTTGGAAGCAGCGCCTCGAGGTGTGCATTGGTGCTGCTAGGGGACTTCACTACCTACATACAGGAGCCGAACGCGGTATAATTCACAGGGATGTCAAGACAACCAACATATTGCTGGATGAGAAATTTGTAGCCAAAATGGCCGATTTTGGTTTGTCGAAAGATGGACCGGCTTTGGACCATACGCATGTTAGCACAGCTGTGAAGGGAAGCTTTGGCTATCTAGACCCCGAGTACTTCAGGAGACAGCAATTGACTGAGAAATCGGATGTTTACTCTTTCGGGGTCGTGTTGTTTGAAGTTGTTTGTGCTAGAGCTGTGATCAATCCAACCTTGCCTAAAGATCAGATCAATCTTGCAGAATGGGCAATGAGATGGCAAAGGCAAAGATCACTTGAAACAATCATTGATCCTCATCTTAGAGGAAACTATTGTCCGGAATCCTTGTCGAAGTTTGGGGAGATAGCCGAGAAATGTCTCGCCGACGATGGGAAGAGCAGGCCAACCATGGGGGAGGTGTTGTGGCACTTAGAATATGTGTTGCAGCTACATGAAGCTTGGTTGAACAGGGACAGTATTGTAACTTCCTTCTCTAGTACTAGTAGCCAAGATTTGAGAGGTGCAAAAGATGGAGGACTAGAATTGGTGCATGAGACTTCAAGTCAAGATGAAGAAAATGAATGA 1857 0.4383 METMYRLNVGGPEIQPDQDPDLWRSWEMDSHYMITENAGIGIKNTSNITYASVNDTSVAPLLVYETARAMSNTEVLDKRFNMSWKFEVDPDFDYLVRLHFCELVYDKANERIFKIYINNRTAADNVDVYVQAGGKNKAYHVDYFDAMSSSIDTLWVQLGPDAGAGAAGTDALLNGLEIFKLSRNGNLAYVDKHDSVGNAASKSKVLWVGIGAGLASIAVIAVIVVLVFCFCRSWQNKSSDTKNNSPGWRPLFLVGATVNSTMAAKGSSGSQKAYGSVVSTRAGKHFTLAEIIAATKNFDESLVIGVGGFGKVYKGEIDGGVLAAIKRANPQSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKNEMILVYEYMSNGTLRSHLFGSDLPPLTWKQRLEVCIGAARGLHYLHTGAERGIIHRDVKTTNILLDEKFVAKMADFGLSKDGPALDHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVVCARAVINPTLPKDQINLAEWAMRWQRQRSLETIIDPHLRGNYCPESLSKFGEIAEKCLADDGKSRPTMGEVLWHLEYVLQLHEAWLNRDSIVTSFSSTSSQDLRGAKDGGLELVHETSSQDEENE 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc377g00003 618 CDD STKc_IRAK 304 569 - -
Stsc377g00003 618 FunFam Receptor-like protein kinase FERONIA 1 183 - -
Stsc377g00003 618 SMART serkin_6 298 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc377g00003 618 Pfam Malectin-like domain 2 180 IPR024788 -
Stsc377g00003 618 MobiDBLite consensus disorder prediction 592 618 - -
Stsc377g00003 618 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Stsc377g00003 618 FunFam Receptor-like protein kinase FERONIA 374 588 - -
Stsc377g00003 618 Gene3D - 1 182 - -
Stsc377g00003 618 Pfam Protein tyrosine and serine/threonine kinase 303 566 IPR001245 GO:0004672|GO:0006468
Stsc377g00003 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Stsc377g00003 618 FunFam receptor-like protein kinase FERONIA 261 373 - -
Stsc377g00003 618 MobiDBLite consensus disorder prediction 601 618 - -
Stsc377g00003 618 Gene3D Phosphorylase Kinase; domain 1 257 373 - -
Stsc377g00003 618 ProSiteProfiles Protein kinase domain profile. 298 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc377g00003 618 SUPERFAMILY Protein kinase-like (PK-like) 275 570 IPR011009 -
Stsc377g00003 618 Gene3D Transferase(Phosphotransferase) domain 1 374 588 - -
Stsc377g00003 618 PANTHER OS07G0166700 PROTEIN 284 575 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc377g00003 Stsc-Chr377 15279 17440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc377g00003 1 593 Receptor kinase-like Gene Family AT1G30570 70.756 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc377g00003 PK_Tyr_Ser-Thr 5.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc377g00003 - - gmx:100791403 1036.56