Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc373g00013 ATGGTGGATAGTTTGGATCTGAGTTATAATAATTTCACTGGTAAACTTCACAAGGAACTTGCTTCTCTAAGGTATATAAACCTTTCATACAACTCCTTCAACTTTTCTCAAGACAAAGACATGAAGTCACAACAACTTGACTATTGTTTTTTCCGAAAAGAATCGTTAATCGGTTGCAGCACACCAAACTTCACATCCTGTCAAGTTTTCCAACAAACTAGTCCTCAGACTAGTAAGACTACAAGCCTCCTTGTAATAGCTCTTCCTATAGCCTGCATCATTCTTTTCACAATACCAGCAATAATACTTTGCGCAAGAAGTATCAAAAGTAGAAAGATTGAGGAAAGAACAGCAAAGAATGGAGACCTGTTTTCTATATGGAACTATGATGGGAAAATTGCTTTTGAAGATATCATTGAAGCAACACAGGACTTTGATATCAGATACTGCATAGGAACTGGTGCATATGGCAGTGTGTACAGAGCACAACTTCCAAGTGGCAAAGTTGTTGCATTGAAGAAACTTCATCAAATGGAGTCTCAAAATCCATCTTTTGACAAGAGCTTCCAAAACGAGGTAAAGATGTTATCACAAATTGTTCATAGAAACATTGTCAAGCTTCATGGTTTTTGTCTCCACAATAGATGCATGTTTTTGGTATACGAATACATGGAAAGAGGAAGCTTGTTTTATGCCTTGAGAATGGATGATGAAGCTGAGAAGCTAAGTTGGAGCCAGAGGGTGAATATCATTATCGGAACAGCGAATGCTTTGGCTTACATGCATCATGATTGTTCCCCAGCAATAGTTCACAGAGATGTAACAAGCAGCAACATTTTGTTGAACTCAGAGTTGCATGCTGTTGTCTCAGACTTTGGAACTGCTAGACTTCTTGATCCAGATTCTTCAAATCAGACATTACAAGTTGGAACATATGGATACCTTGCACCAGAGTTGGCCTACACAATGAGAGTGACAGAAAAGTGTGATGTATACAGTTTTGGAGTGGTGGCACTGGAAACATTAATGGGAAGGCATCCAAAAGAGCTAATCTTGTCTCTGTTGGACTCTTCTAACAACAAAAACATGATGGTAAAAGATCTCTTGGATTCACGCACCCGTATACCATTATGTCATAGAGACACTGAAGCAATAATTCAGGTGGTAAAATTGGCATTGGCATGCTTGCACTCTAATCCAATGTTAAGACCATCAATGCAGCAAGTGGTTCATGAACTTTCTAGTTTCAAACAATTGTCATTGCCTTTTCCTTTCTCTGAAATCACAATCCATCAGCTGATAGCTTAG 1308 0.3861 MVDSLDLSYNNFTGKLHKELASLRYINLSYNSFNFSQDKDMKSQQLDYCFFRKESLIGCSTPNFTSCQVFQQTSPQTSKTTSLLVIALPIACIILFTIPAIILCARSIKSRKIEERTAKNGDLFSIWNYDGKIAFEDIIEATQDFDIRYCIGTGAYGSVYRAQLPSGKVVALKKLHQMESQNPSFDKSFQNEVKMLSQIVHRNIVKLHGFCLHNRCMFLVYEYMERGSLFYALRMDDEAEKLSWSQRVNIIIGTANALAYMHHDCSPAIVHRDVTSSNILLNSELHAVVSDFGTARLLDPDSSNQTLQVGTYGYLAPELAYTMRVTEKCDVYSFGVVALETLMGRHPKELILSLLDSSNNKNMMVKDLLDSRTRIPLCHRDTEAIIQVVKLALACLHSNPMLRPSMQQVVHELSSFKQLSLPFPFSEITIHQLIA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc373g00013 435 SUPERFAMILY Protein kinase-like (PK-like) 129 413 IPR011009 -
Stsc373g00013 435 CDD STKc_IRAK 151 413 - -
Stsc373g00013 435 Gene3D Transferase(Phosphotransferase) domain 1 224 421 - -
Stsc373g00013 435 Gene3D Phosphorylase Kinase; domain 1 105 223 - -
Stsc373g00013 435 PANTHER LEUCINE RICH REPEAT KINASE 2 3 417 - -
Stsc373g00013 435 ProSitePatterns Tyrosine protein kinases specific active-site signature. 269 281 IPR008266 GO:0004672|GO:0006468
Stsc373g00013 435 Pfam Protein kinase domain 150 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00013 435 FunFam MDIS1-interacting receptor like kinase 2 224 419 - -
Stsc373g00013 435 ProSiteProfiles Protein kinase domain profile. 145 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00013 435 FunFam Leucine-rich repeat receptor protein kinase MSP1 108 223 - -
Stsc373g00013 435 ProSitePatterns Protein kinases ATP-binding region signature. 151 173 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc373g00013 Stsc-Chr373 46827 48228 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc373g00013 2 317 Receptor kinase-like Gene Family AT4G08850 43.807 6.11e-82 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc373g00013 Pkinase 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc373g00013 - - gmx:102667972 588.571