Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc373g00011 ATGGCTTCCACCAATGAGGAACTTTCTTCTTTGGTGAAGAGTGGTTGGTGGAGAAGTGATTATCATAATAATATCACAAACCATTGTGATTGGACTGCAATCACATGTAATGAAGCTGGAAGTGTTACAGACATTGCTGCACACTACTGGCCTTTCAATCTTCCTCCATCAACAATGAAGCTTCAGAGCTTGAACCTCACTGCATTTCCCAGTTTAGTCACTCTGTACCTACCTCGAATGCAACTCACCGGAATCATCCCTGCCGAGATAGGTACTCTTTCGAAACTTGTAACTCTTGATCTGTCATATAATCATCTTCATGGTGAGCTTCCAAGATCACTTTCAAGTCTTACCCAGCTCAAACTTGTTGATGTTTCCTTCAATTATCTTAGTGGTGCCATTCCTTCTGAGTTGGGTAAATTAGAGAATCTAACTTCTCTTTCACTTGCTTCAAACCAATTCCATGGTCCAATACCACAACAGTTAGGGAATTTAAGAGACTTACAAGAACTAGATTTCTCAAACAATTTGATCAATGGTACAATCCCTTCTGCTTTAGGACTACTGGGAAACTTGACTGTTCTTTCACTTGCTTCAAACCAAATTGAAGGTGACATACCTCAAAATCTTGGGAATTTAAAGAGTTTACGAAAAATCTCACTCTCAAAAAATTCACTTTCAGGTTCAATCCCTTTAACTCTATGTCAATTGAGATATTTATCTGATCTCTACCTTGATTCAAACCAAATAGAAGGACAAATACCAACTGAGATAGGGAGTTTAGAAGGACTAAAAGTATTAAATCTTTCATCTAACTCTCTTTTTGGTCCAATTCCTTCTGAAGTTGGAGCTTTAGTTTCCTTAGAGAAGTTATACATAGAGTTCAATCAAATAAATGGTTCTATACCTTCAGAATTTCAGAATTTGGTCAGCCTAAATACCTTACATCTTTCTCACAATAAGATATCTGGTGTTATACCATCTGAATTGTTCAAGTTAGCCTTGTCTTCTCTTCATCTTTCAACCAACCAATTAGTTGGGAAAATACCATTTGAGATGAGAGATTCCACTAGCCATTGTGATGTAGACCTTTCCAACAACAAGCTAGAAGGATTCATCCCATCTCCTATAGTAAACTGTTTCCTAGCAAGGGTTAATTTAAGCAATAACCAGCTAAGTGGCGGCATTCCTGTGGATATTGGTCATGTCAACATCCTTGCTGTTAGTCACAATTTTCTGAGTGGTGAAGTACCTTCTTTGGTCACTATTGACAATGATTATGGGAGGCTAGTAGATATAAATCTTACATTATCAAGTTTGGATCTTAGCTACAACCATCTCTCTGGTGTTCTACCCATTAAGCTTGCAAATGTACTTCATATAAACTTGTCATTCAATTTCTTTAAGTGTTCAGAAAGCTTCAAAGCTTTCCATAAAGAATCACTAATTGGTAACACTCCTCATTTCCCTTGTCTTTATTCTCAAGTCCAGAAAACAAAAAATGCCAATCACCTCATTGTAATTATTCTTCCTGTTACTTGCATCTTCCTTATCATTTGTCTGTTCATATTGTATTTTACTTTGTCCACCAATAAAACCAAAATTGAACCAAGACAAGACAAACATGGAGACATGTTCTGTATATGGAACTATGATGGTAGAATTGCATTTCAAGACATCATTGAAGCAACAAATAACTTTGACTTCCAGTACTGTATTGGTACTGGAGCATATGGTAGTGTTTATAGAGCACAATTACCAAGTGGAAAAGTTGTTGCATTGAAGAAACTTCATCAGAATGAATCTCAAAACATGTCTTTCAATGAAAGCTTACAGAATGAAGTCAAGATGTTAACAGAAATCCGTCACAGAAATATTGTGAAACTTCATGGCTTTTGCCTTCACAGTCAATTCAAGTTTTTGGTTTATGAATACATTGAAAGAGGAAGCTTATTTCATGCCTTGAACAACATTCAGCAAATTGGGGATTTGAACTGGAGCAAGAGGCTGAATATCATTAAGGGAATGGCTAATGCATTGTCTTACATGCACCATGATTGTGTTCCTCCAATTGTTCATCGAGATGTGTCAAGTAGCAATATTCTGTTGAATTCACAGCTTGATGCAGTCATCTCAGACTTTGGCCTAGCTAGATTTATTGATCCTGATTCCTCAAATCAAACCTTACGAGTTGGAACATATGGCTATATTGCCCCAGAACTTGCATATTCATGGACTCTGACTGAAAAATGTGATGTTTTTAGTTTTGGAGTAGTGGCACTGGAAACATTGATGGGAAGGCATCCAAGAGAGCTAATCTCATCTTTATTCGACGCTTCTCCGCAGAACATGTTGTTGAAAGATCTGTTAGATTCGCGTGTTCATCTACCTAATAGGCAGAAAGATGCTCAAGATATAGCTCTTGTGGTTAAGTTAGCACTAGCATGTCTGCATTCTAAACCAGATTCCAGACCATCAATGTTACAAGTGTCTCAACAACTTTCTAGTTCCCGACAGTCACCACTGCAAGCATCTTTCTCTGAAATTTCATTCCATCAATTGATGACTCAAGGGCTATAA 2580 0.3729 MASTNEELSSLVKSGWWRSDYHNNITNHCDWTAITCNEAGSVTDIAAHYWPFNLPPSTMKLQSLNLTAFPSLVTLYLPRMQLTGIIPAEIGTLSKLVTLDLSYNHLHGELPRSLSSLTQLKLVDVSFNYLSGAIPSELGKLENLTSLSLASNQFHGPIPQQLGNLRDLQELDFSNNLINGTIPSALGLLGNLTVLSLASNQIEGDIPQNLGNLKSLRKISLSKNSLSGSIPLTLCQLRYLSDLYLDSNQIEGQIPTEIGSLEGLKVLNLSSNSLFGPIPSEVGALVSLEKLYIEFNQINGSIPSEFQNLVSLNTLHLSHNKISGVIPSELFKLALSSLHLSTNQLVGKIPFEMRDSTSHCDVDLSNNKLEGFIPSPIVNCFLARVNLSNNQLSGGIPVDIGHVNILAVSHNFLSGEVPSLVTIDNDYGRLVDINLTLSSLDLSYNHLSGVLPIKLANVLHINLSFNFFKCSESFKAFHKESLIGNTPHFPCLYSQVQKTKNANHLIVIILPVTCIFLIICLFILYFTLSTNKTKIEPRQDKHGDMFCIWNYDGRIAFQDIIEATNNFDFQYCIGTGAYGSVYRAQLPSGKVVALKKLHQNESQNMSFNESLQNEVKMLTEIRHRNIVKLHGFCLHSQFKFLVYEYIERGSLFHALNNIQQIGDLNWSKRLNIIKGMANALSYMHHDCVPPIVHRDVSSSNILLNSQLDAVISDFGLARFIDPDSSNQTLRVGTYGYIAPELAYSWTLTEKCDVFSFGVVALETLMGRHPRELISSLFDASPQNMLLKDLLDSRVHLPNRQKDAQDIALVVKLALACLHSKPDSRPSMLQVSQQLSSSRQSPLQASFSEISFHQLMTQGL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc373g00011 859 Gene3D Transferase(Phosphotransferase) domain 1 646 851 - -
Stsc373g00011 859 ProSiteProfiles Leucine-rich repeat profile. 191 214 IPR001611 GO:0005515
Stsc373g00011 859 Pfam Leucine rich repeat 70 130 IPR001611 GO:0005515
Stsc373g00011 859 Pfam Leucine rich repeat 191 250 IPR001611 GO:0005515
Stsc373g00011 859 Pfam Leucine rich repeat 287 345 IPR001611 GO:0005515
Stsc373g00011 859 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 237 836 - -
Stsc373g00011 859 Gene3D Phosphorylase Kinase; domain 1 529 645 - -
Stsc373g00011 859 Gene3D Ribonuclease Inhibitor 159 254 IPR032675 -
Stsc373g00011 859 FunFam Leucine-rich repeat receptor protein kinase MSP1 530 645 - -
Stsc373g00011 859 ProSiteProfiles Leucine-rich repeat profile. 311 332 IPR001611 GO:0005515
Stsc373g00011 859 ProSitePatterns Tyrosine protein kinases specific active-site signature. 691 703 IPR008266 GO:0004672|GO:0006468
Stsc373g00011 859 Pfam Leucine Rich Repeat 264 281 IPR001611 GO:0005515
Stsc373g00011 859 Gene3D Ribonuclease Inhibitor 356 491 IPR032675 -
Stsc373g00011 859 SUPERFAMILY Protein kinase-like (PK-like) 550 834 IPR011009 -
Stsc373g00011 859 FunFam MDIS1-interacting receptor like kinase 2 646 840 - -
Stsc373g00011 859 SMART LRR_typ_2 309 333 IPR003591 -
Stsc373g00011 859 SMART LRR_typ_2 141 165 IPR003591 -
Stsc373g00011 859 SMART LRR_typ_2 93 117 IPR003591 -
Stsc373g00011 859 SMART LRR_typ_2 237 261 IPR003591 -
Stsc373g00011 859 SMART LRR_typ_2 189 213 IPR003591 -
Stsc373g00011 859 SMART LRR_typ_2 285 308 IPR003591 -
Stsc373g00011 859 FunFam Nuclear pore complex protein NUP107 5 159 - -
Stsc373g00011 859 Pfam Protein kinase domain 572 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00011 859 Gene3D Ribonuclease Inhibitor 255 355 IPR032675 -
Stsc373g00011 859 Gene3D Ribonuclease Inhibitor 4 158 IPR032675 -
Stsc373g00011 859 SUPERFAMILY RNI-like 64 372 - -
Stsc373g00011 859 FunFam Leucine-rich repeat receptor protein kinase EMS1 256 334 - -
Stsc373g00011 859 SUPERFAMILY L domain-like 335 474 - -
Stsc373g00011 859 ProSitePatterns Protein kinases ATP-binding region signature. 573 595 IPR017441 GO:0005524
Stsc373g00011 859 ProSiteProfiles Protein kinase domain profile. 567 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00011 859 SMART LRR_sd22_2 141 167 - -
Stsc373g00011 859 SMART LRR_sd22_2 93 119 - -
Stsc373g00011 859 SMART LRR_sd22_2 285 311 - -
Stsc373g00011 859 SMART LRR_sd22_2 189 215 - -
Stsc373g00011 859 FunFam Leucine-rich repeat receptor protein kinase EMS1 160 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc373g00011 Stsc-Chr373 42119 44859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc373g00011 69 739 Receptor kinase-like Gene Family AT4G08850 36.501 4.05e-130 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc373g00011 Pkinase 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc373g00011 - - aprc:113851126 816.224