Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc373g00009 ATGGTGGCAAAGTGTAGTAACTTGGCTTTGTTAGTTATAGCAGTGCCTCTTCTGTTTTCCATTTGCACCACAGCCTCTTCCTTCAATAATCTTAATGGTAAGCTTCCTCCAACTTTTTCAAACCTCACTCAAGTTGTCATGTTGAAGAATTATATGTTTCTTTCAATTCTCATAGTCATAGTTGCATGGTTCCTGACTTCCTTATACTTTCAGTCAACTGGAGATTTGATATATCTTTCAAATAATTCACTAACAGGTACAATTCCTTCTACTTTGGGCCAGTTGGAGAGTTTGATATATCTCTACTTAGATTCAAACCAAATTGAAGGACATATTCCAGCAGAGATAGGGAATTTAAAACAATTATACGCATTAAGTCTTTCAAATAACTCTCTTTCTGGTGATATACCACCCATACTGTTTCAGCTTACCAACTTGATCTCTCTTAGTCTTTCTAACAATCAATTGGGTGGACACATACCATCCGATATAGGAAGTTCCGATTCCCTTTGCAATGTAAACCTTTCCTATAACAAGTTAGAAGGATTTATCCCATCTCCAATTCTAAACTGTTCCTCTTTTGGTCCCTCTTTGGATCTTAGCTACAATAATCTCACGGGTACCCTACCAATAGAACTTGCAAATATACCTTACTTAAATTTGTCATTCAACTTTTTTGAGTGTCCACAAGCCTTCAAAGGCTTCTATGCTGAATCCTTCATTGGTAATACTCCCAAGTGCAATGCCAGCTCTGTTGTTCAAGTTCAGAAAACCAAAAGACCGAAGAACCTTCTTGTAATTGTTCTTCATGTCACTAGTTGCTTCCTCCTCATCATTTTTGTGGGCATATTTTGTTTTGTTCGATGCACCAAGAAGGTTAAATTTGAACAAAGTGCAGAAAAGAATGGAGACTTGTTTTCCATATGGAACTATGATGGTAAAATTGCAGTTGAAGATATCATTGAAGCAACACAAGACTTTGATATCAGATACTGCATTGGAACCGGTGGTTATGGCAGTGTGTACAGAGCCCAACTTCCAAATGGCAAAATTGTTGCGTTGAAGAAACTTCACCAAAGGGAATCTCAAAATCCCTCTTTTGACAGGAGCTTCCGAAACGAGGTAAAGATGTTATCACAAATCCGTCATAGAAACATTGTCAAGCTTCATGGTTTTTGTCTTCACAACAGGTGCATGTTTTTGGTATATGAATACATGGAAAGAGGAAGCCTATTTTATGCATTGAGCATTGATGATGAAGCTAAGGAGCTAAGTTGGAGCCAGAGGACATTACAAGTTGGAACATATGGATACCTTGCACCAGAGTTGGCCTACACAATGAGAGTGACAGAAAAGTGTGATGTATACAGTTTTGGAGTGGTGGCACTGGAAACATTAATGGGAAGGCATCCAAAAGAGCTAATCTTGTCTTTGTTGGACTCTTCTAACGAAAACATAATGGTAAAAGATCTCTTGGATTCACGCATCCGTATGCCATTATGTCAAAGAGACAGTGAAGCAATAGTTGAGGTGGTAAAATTGGCATTGGCATGCTTGCGCTCTAATCCAAAGTCAAGACCAACAATGCAGCAAGTGGCTCATGAACTTTCTAATTTCAAGCAATCGTCAATTTCTTTGCCTTTTTCTGAGATCACAGTTAATCAGTTGATAGCTTAA 1677 0.3822 MVAKCSNLALLVIAVPLLFSICTTASSFNNLNGKLPPTFSNLTQVVMLKNYMFLSILIVIVAWFLTSLYFQSTGDLIYLSNNSLTGTIPSTLGQLESLIYLYLDSNQIEGHIPAEIGNLKQLYALSLSNNSLSGDIPPILFQLTNLISLSLSNNQLGGHIPSDIGSSDSLCNVNLSYNKLEGFIPSPILNCSSFGPSLDLSYNNLTGTLPIELANIPYLNLSFNFFECPQAFKGFYAESFIGNTPKCNASSVVQVQKTKRPKNLLVIVLHVTSCFLLIIFVGIFCFVRCTKKVKFEQSAEKNGDLFSIWNYDGKIAVEDIIEATQDFDIRYCIGTGGYGSVYRAQLPNGKIVALKKLHQRESQNPSFDRSFRNEVKMLSQIRHRNIVKLHGFCLHNRCMFLVYEYMERGSLFYALSIDDEAKELSWSQRTLQVGTYGYLAPELAYTMRVTEKCDVYSFGVVALETLMGRHPKELILSLLDSSNENIMVKDLLDSRIRMPLCQRDSEAIVEVVKLALACLRSNPKSRPTMQQVAHELSNFKQSSISLPFSEITVNQLIA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc373g00009 558 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Stsc373g00009 558 ProSiteProfiles Protein kinase domain profile. 327 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00009 558 Pfam Protein kinase domain 424 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00009 558 Pfam Protein kinase domain 332 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00009 558 SUPERFAMILY L domain-like 5 227 - -
Stsc373g00009 558 Gene3D Ribonuclease Inhibitor 137 255 IPR032675 -
Stsc373g00009 558 Pfam Leucine rich repeat 77 132 IPR001611 GO:0005515
Stsc373g00009 558 SMART LRR_typ_2 143 167 IPR003591 -
Stsc373g00009 558 SMART LRR_typ_2 95 119 IPR003591 -
Stsc373g00009 558 Gene3D Ribonuclease Inhibitor 18 136 IPR032675 -
Stsc373g00009 558 PANTHER LEUCINE RICH REPEAT KINASE 2 27 429 - -
Stsc373g00009 558 FunFam Piriformospora indica-insensitive protein 2 71 159 - -
Stsc373g00009 558 SUPERFAMILY Protein kinase-like (PK-like) 310 541 IPR011009 -
Stsc373g00009 558 Gene3D Transferase(Phosphotransferase) domain 1 406 549 - -
Stsc373g00009 558 FunFam Leucine-rich repeat receptor protein kinase MSP1 290 405 - -
Stsc373g00009 558 Gene3D Phosphorylase Kinase; domain 1 288 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc373g00009 Stsc-Chr373 35665 37617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc373g00009 27 429 Receptor kinase-like Gene Family AT4G08850 36.000 2.01e-73 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc373g00009 Pkinase 1.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc373g00009 - - vum:124829098 463.766