Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc373g00007 ATGGTGGTGGCAAAGTGTAGTAACTTGGCTTTGCTTATTGTAGCAGTGCTGCTTTTGGTTTGCACCACAGCCTCTTCTCTCATATTCCCACCACCAAATGCTTCCTCAGAGAGGCAAGCTTTAATACAGAGTGGTTGGTGGAGTCATGACCACAATATCTCAAACTCAAACCATTGCAATTGGACAGGCATCATCTGTGACCATGCTGGAAGTGTTGCACAGATTAATGGATGGAAATTGAATAGTGAACACAAATTATTGCAGCTACAGGACTTGAACTTCACAGCCTTCCCTAATTTGGTCTCTCTCAATCTTGATGGAATGGGGCTTTCAGGAACCATCCCCGAAGAAATAGGTACTCTCACAAAGCTTGTCAGTCTTGATCTGTCCTTTAACAATCTCCATGGTAAGCTGCCTCCAACACTTTCAAACCTCACTCAGCTTGTAGAGTTTGATGTTTCTTTCAATGCTCTTAGTGGTACCATTCCTTCTAATTTTGGTCATCATTGGGAGACTTTGATGAATCTCTACTTACACTCTAATCAAATTGAAGGTCCTATACCACTAGAATTAGGTAACTTGAGAAGCATAGAGGTACTGTATCTTTCAAATAATTCACTGACAGGTACAATCCCTTCTACTTTGGGTCTATTAGAGAACTTAACACTTCTTGACCTTTCTTCAAACCAAATACAAGGACATATACCAGTAGAGATAGGAAACTTGAAACAATTACAACTATTAAGTCTTTCAAATAACTCTCTTTCTGGTCAAATCCCTCGTGAAATAGGAGCATTGGTGTCTTTACTAGACTTATACATAGATTTCAATCAAATAAATGGTTCAATTCCTTCAGAATTTCAGAATTTGATCAACTTGAAAACTTTGTATCTTTCTCATAATATGATATCTGGTGTTATACCACCCAAACTGTTTCAGTTAACCAACTTGACCTCTCTTAGTATTTCTAACAATCAATTGGGTGGAAACATACCATCAGAGATAGGAAATCTTGCTTCGCTTTGCGACGTAGACCTTTCCTATAACAAGTTAGAAGGATTGATTCCATCTCCAGTGCTAAACTGTTTCAATTTTGGGAAAGTTGACTTGAGTAATAATCTGTTAAGTGGAAATATCCCTTCCTTAATTGGTTATGTTGAAAAACTTGACCTCAGCCACAATTATCTCAATGGTAGTGTACCCTTTTTGTCCACCATTGAAGGCAGAGAACCTGCTTTGTCAAGTTTGGATCTTAGCTACAATAATCTCACAGGTATTCTACCAATAGAACTTGCAAATATAGCTCATATAAATCTGTCATTCAACTCTTTTGAGTGTCCACAAGGCTGCAAAGGTTTCCTTGCAGAATCACTAACTGGTAACACTTTTGTTCAAGTCAAGAAACCCAAAAACAGAAAGAACCTCATTGTAATTACTCTTCCTGTCGCTTGTTGCTTCCTCCTCTTCATTTTTGTTGGCATATTTTGTTATATTCGATGCACCAAGAAGGCTAAATTTGAGCAAGGTTCAGAAAAGAATGGAGACTTGTTTTCCATTTGGAACTATGATGGTAAAGTTGCATTTGAAGACATCATTGAAGCAACACAAGACTTTGATATCAGATACTGCATAGGAACAGGTGGTTATGGCAGTGTGTACAGAGCGCAACTTCCAAATGGAAAAATTGTTGCTTTGAAGAAACTTCACCAAAGAGAGTCACAAAATCCCTCTTTTGACAGGAGCTTCCGCAACGAGGTAAACATGTTATCACAAATCCGTCATAGAAACATTGTCAAGCTTCATGGGTTTTGTCTCCACAATCGATGCATGTTTTTGGTATATGAATACATGGAGAAAGGAAGCTTATTTTATGCCTTGAGCATTGACGATGAAGCTAAGGAGTTAAGTTGGAGCAAGAGGGTGAATATTGTTACCGGAGCAGCTAATGCTTTGGCTTACATGCATCATGATTGTTCCCCACCAATAGTTTACAGAGATGTAACAAGCAGCAACATTTTGTTGAACTCAGAGTTGCATGCTGTTGTCTCAGACTTTGGCACTGCTAGACTTCTTGATCCGGATTCTTCAAATCAGACATTACAAGTTGGAACATATGGATACCTTGCATATGGATACCTTGCACCAGAGCTGGCCTACACAATGAGAGTGACAGAAAAGTGTGATGTATACAGTTTTGGAGTGGTGGCATTGGAAACATTAATGGGAAGGCATCCAAAAGAGCTAATATTGTCTTTGTTTGGCTCATCTAACAAAAACATAATGATAAAAGATCTCTTGGATTCACGGATCCGCTTACCATTATGTCAAAGAGACACTCAAGCTATAGTTCAAGTGGTAAAACTGGCATTGGCATGCTTGCGCTCTAATCCAAAGTCAAGACCATCAATGCAGCAAGTGGCTCATGAACTTTCTAATTTCAAACAATCATCAATTTCTTTGCCTTTTTCTGAAATCAGAGTTCATCAGTTGATAGCTTGA 2499 0.3866 MVVAKCSNLALLIVAVLLLVCTTASSLIFPPPNASSERQALIQSGWWSHDHNISNSNHCNWTGIICDHAGSVAQINGWKLNSEHKLLQLQDLNFTAFPNLVSLNLDGMGLSGTIPEEIGTLTKLVSLDLSFNNLHGKLPPTLSNLTQLVEFDVSFNALSGTIPSNFGHHWETLMNLYLHSNQIEGPIPLELGNLRSIEVLYLSNNSLTGTIPSTLGLLENLTLLDLSSNQIQGHIPVEIGNLKQLQLLSLSNNSLSGQIPREIGALVSLLDLYIDFNQINGSIPSEFQNLINLKTLYLSHNMISGVIPPKLFQLTNLTSLSISNNQLGGNIPSEIGNLASLCDVDLSYNKLEGLIPSPVLNCFNFGKVDLSNNLLSGNIPSLIGYVEKLDLSHNYLNGSVPFLSTIEGREPALSSLDLSYNNLTGILPIELANIAHINLSFNSFECPQGCKGFLAESLTGNTFVQVKKPKNRKNLIVITLPVACCFLLFIFVGIFCYIRCTKKAKFEQGSEKNGDLFSIWNYDGKVAFEDIIEATQDFDIRYCIGTGGYGSVYRAQLPNGKIVALKKLHQRESQNPSFDRSFRNEVNMLSQIRHRNIVKLHGFCLHNRCMFLVYEYMEKGSLFYALSIDDEAKELSWSKRVNIVTGAANALAYMHHDCSPPIVYRDVTSSNILLNSELHAVVSDFGTARLLDPDSSNQTLQVGTYGYLAYGYLAPELAYTMRVTEKCDVYSFGVVALETLMGRHPKELILSLFGSSNKNIMIKDLLDSRIRLPLCQRDTQAIVQVVKLALACLRSNPKSRPSMQQVAHELSNFKQSSISLPFSEIRVHQLIA 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc373g00007 832 ProSiteProfiles Leucine-rich repeat profile. 292 314 IPR001611 GO:0005515
Stsc373g00007 832 FunFam Leucine-rich repeat receptor protein kinase EMS1 214 308 - -
Stsc373g00007 832 SUPERFAMILY L domain-like 55 382 - -
Stsc373g00007 832 ProSitePatterns Tyrosine protein kinases specific active-site signature. 662 674 IPR008266 GO:0004672|GO:0006468
Stsc373g00007 832 Gene3D Transferase(Phosphotransferase) domain 1 617 822 - -
Stsc373g00007 832 ProSiteProfiles Protein kinase domain profile. 538 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00007 832 FunFam Leucine-rich repeat receptor protein kinase MSP1 501 616 - -
Stsc373g00007 832 SUPERFAMILY L domain-like 355 448 - -
Stsc373g00007 832 Pfam Protein kinase domain 543 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00007 832 SMART LRR_typ_2 242 266 IPR003591 -
Stsc373g00007 832 SMART LRR_typ_2 315 338 IPR003591 -
Stsc373g00007 832 SMART LRR_typ_2 411 433 IPR003591 -
Stsc373g00007 832 SMART LRR_typ_2 121 144 IPR003591 -
Stsc373g00007 832 SMART LRR_typ_2 194 217 IPR003591 -
Stsc373g00007 832 SMART LRR_typ_2 218 241 IPR003591 -
Stsc373g00007 832 SMART LRR_typ_2 290 314 IPR003591 -
Stsc373g00007 832 SMART LRR_typ_2 145 169 IPR003591 -
Stsc373g00007 832 FunFam Leucine-rich repeat receptor protein kinase EMS1 309 389 - -
Stsc373g00007 832 FunFam MDIS1-interacting receptor like kinase 2 617 816 - -
Stsc373g00007 832 SMART LRR_sd22_2 290 308 - -
Stsc373g00007 832 SMART LRR_sd22_2 121 147 - -
Stsc373g00007 832 SMART LRR_sd22_2 218 244 - -
Stsc373g00007 832 SMART LRR_sd22_2 314 340 - -
Stsc373g00007 832 Gene3D Ribonuclease Inhibitor 172 282 IPR032675 -
Stsc373g00007 832 Gene3D Ribonuclease Inhibitor 283 383 IPR032675 -
Stsc373g00007 832 Gene3D Ribonuclease Inhibitor 34 171 IPR032675 -
Stsc373g00007 832 Gene3D Phosphorylase Kinase; domain 1 499 616 - -
Stsc373g00007 832 FunFam Nuclear pore complex protein NUP107 35 189 - -
Stsc373g00007 832 SUPERFAMILY Protein kinase-like (PK-like) 523 810 IPR011009 -
Stsc373g00007 832 CDD STKc_IRAK 544 810 - -
Stsc373g00007 832 Gene3D Ribonuclease Inhibitor 385 450 IPR032675 -
Stsc373g00007 832 Pfam Leucine rich repeat 172 231 IPR001611 GO:0005515
Stsc373g00007 832 Pfam Leucine rich repeat 271 327 IPR001611 GO:0005515
Stsc373g00007 832 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515
Stsc373g00007 832 ProSiteProfiles Leucine-rich repeat profile. 412 433 IPR001611 GO:0005515
Stsc373g00007 832 ProSitePatterns Protein kinases ATP-binding region signature. 544 566 IPR017441 GO:0005524
Stsc373g00007 832 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 218 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc373g00007 Stsc-Chr373 28466 31057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc373g00007 100 713 Receptor kinase-like Gene Family AT4G08850 40.351 9.94e-134 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc373g00007 Pkinase 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc373g00007 - - gmx:100789677 831.632