Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc373g00006 ATGCTTCTGTTTTCCACCACAGCCTCTTATGTCATACCCCCACCAAATAATGCTTCCTCTTCCTATGATAATTCAGAGAGACATGCCTTACTACAGAGTGGTTGGTGGAGTCATGACCACAATATCTCAAACCATTGCAGTTGGACCGGCATCAGCTGTGACAATGCTGGAAGTGTTATCCAAATTACCGGATGGGATTCATTGAATCTTAATTCCAAACAATCGCCGCTACAGAACTTGAATCTCACTGCCTTCCCCAATTTGAACTCTCTCAATCTTGCTGGAATATGGCTTACAGGAAGCATCCCCGAAGAAATTGGCACTCTCACCAAGCTTTCTTATATTAATCTGTCCAATAATTTTCTCTCTGGTAAGCTGCCTCCAACACTTTCAAACCTCACTCAACTTGAGTCACTTGATGTTTCTTACAATTCTCTTAGTGGCATCATTCCTTCTACTTTTGGTCAATTGGAGAAGTTGATCTTTCTCGCTCTTGCTTCAAACCAAATTTCAGGTCCCATACCATTACAAATAGGGAATTTGAGTCATCTTGAATCATTGTCTCTTTCACACAATTCACTCAGCGGTTCAATTCCCTCTCCTTTAGGACAGTTGCAGAATTTAGCACATCTTGACCTTGCTTCAAACCAAATTTCAGGTCCCATACCATTACAAATAGGGAATTTGAGTCTTCTTGAATCATTGTCTCTTTCACACAACTCACTCAACGGTTCAATTCCCTCTGCTTTGGGACAGTTGGAGAATTTAACACATCTCAGCCTTGCTTCAAACCACATTTCAGGTCCCATACCACTAGAATTAAGAAATTTGAAACGGTTAGAGGAACTAATTATCTCAAATAATTTGTTGACAGGCACAATTCTTTCTACTTTGGGTCAATTAAAGAATTTGATTTCTCTCCACCTTGAGTCCAACCAAGTTAGAGGTTCCATACCGTTTCAACTAGGAAATTTGAACTTGTTAGAAGAATTGTATCTCTCAGATAATTCACTGACAGGTACAATTCCTTCTACTTTGGGTCTATTGGAGAACTTAACAATTCTTGACCTTGCTTCAAACCAAATAGACGGACATATACCAGTAGAGGTGGGGAATTTGAAACAACTACAAATTTTAAATCTTTCAAGCAACTCTCTTTCTGGTCAGATCCCACTGGAAATAGGAGCATTGGTGTCTTTACAAGAGTTATACATTGATTTCAATCAAATAAATGGTTCCATTCCTTCAGCATTTCAGAATTTGATCAAGCTGACCACTTTGAATCTTTCTCATAATATGATATCTGGTGTCATACCACCCAAACTGTTTCAGCTCACCAACTTGGCCTCACTTCATCTTTCTAACAATCAATTGGGTGGAAACATACCATCAGATATTGGAAGTGTCAATTCCCTTTGCGATGTAAACCTATCCTATAACAAGTTAGAAGGATTGATCCCATCTCCTATTCTAAACTGTAGCACTTCTGGGAAAGCAAACTTCAGATATAATCTGTTAAGTGGAAATATTCCTTCAAAAATCGGTTATGTTGATAAACTTGACATTAGCCACAATTTTCTCAACGGTAGTATACCCTTTTGGTCCACTAGTGAATTTCCAAATATTTCTAGGACTACTTTATCAAGTTTAGATCTTAGCTACAATAATCTCACAGGTATTCTACCAATAGAACTTGCAAACATAGGTGATTTAAATTTGTCATTCAACTTTTTTGAGTGTCCACAAGGCTGCGATGGCTTCCCTGCCCGATCATTAATTGGTAATATTCCAACCACCAATGTCAACGCTATTGTTCAAGTTCAGAAAACCAAAAGACCAAAGAACCTTATTGTAATTGCTCTTCCTGTCATTTGTTGCTTCCTCTTCATTTTGGTGGGCATATTTTGTTTTATTCGATGCATCAAGAAGGTTAAATTTGAACCAAGTTCAGAAAAGAATGGAGACTTGTTTTCCATATGGAACTATGATGGTAAAATTGCATTTGAAGACATCATCGAAGCAACACATGACTTTGATATCAGATACTGCATAGGAACTGGTGGTTATGGCAGTGTGTACAGGGCGCAACTTCGAAATGGCAAAATTGTTGCATTGAAGAAACTTCACCAAAGGGAATCTCAAAATCCTTCTTTTGACAGGAGCTTCCGCAACGAGGAGCTAAGCTGGAGCAAGAGGGTGAATATCATTCTTGGAACGGCTAATGCTTTGGCTTACATGCATCATGATTGTTCCCCGCCAATTGTTCATAGAGATGTAACAAGCAACAACATTTTGTTGAACTCAGAGTTGCATGCTGTTGTCTCAGACTTTGGCACTGCTAGACTTCTTGATCCGGATTCTTCAAATCAGACATTACAAGTTGGAACATATGGATACCTTGCACCAGAGCTGGCCTACACAATGAGAGTGACAGAAAAGTGTGATGTATACAGTTTTGGAGTGGTGGCATTGGAAACATTAATGGGAAAGCATCCAAAAGAGCTAATCTTGTCTTTGTTGGACTCTTCTAACGAAAACATAATGATAAAAGATCTCTTGGATTCGCGCATCCGCTTACCATTATCTCAAAGAGACACTCAAGCTATAGTTCAAGTGGTAAAATTGGCATTGGCATGCTTGCACTCTAATCCAAAGTCCAGACCATCAATGCAGCAAGTGGCTCACGAGCTTTCTAATTTCAAGCAATCATCAATTTCTTTTCCTTTTTCTGAAATCACAGTTCATCAGTTGATAGCTTAA 2760 0.3884 MLLFSTTASYVIPPPNNASSSYDNSERHALLQSGWWSHDHNISNHCSWTGISCDNAGSVIQITGWDSLNLNSKQSPLQNLNLTAFPNLNSLNLAGIWLTGSIPEEIGTLTKLSYINLSNNFLSGKLPPTLSNLTQLESLDVSYNSLSGIIPSTFGQLEKLIFLALASNQISGPIPLQIGNLSHLESLSLSHNSLSGSIPSPLGQLQNLAHLDLASNQISGPIPLQIGNLSLLESLSLSHNSLNGSIPSALGQLENLTHLSLASNHISGPIPLELRNLKRLEELIISNNLLTGTILSTLGQLKNLISLHLESNQVRGSIPFQLGNLNLLEELYLSDNSLTGTIPSTLGLLENLTILDLASNQIDGHIPVEVGNLKQLQILNLSSNSLSGQIPLEIGALVSLQELYIDFNQINGSIPSAFQNLIKLTTLNLSHNMISGVIPPKLFQLTNLASLHLSNNQLGGNIPSDIGSVNSLCDVNLSYNKLEGLIPSPILNCSTSGKANFRYNLLSGNIPSKIGYVDKLDISHNFLNGSIPFWSTSEFPNISRTTLSSLDLSYNNLTGILPIELANIGDLNLSFNFFECPQGCDGFPARSLIGNIPTTNVNAIVQVQKTKRPKNLIVIALPVICCFLFILVGIFCFIRCIKKVKFEPSSEKNGDLFSIWNYDGKIAFEDIIEATHDFDIRYCIGTGGYGSVYRAQLRNGKIVALKKLHQRESQNPSFDRSFRNEELSWSKRVNIILGTANALAYMHHDCSPPIVHRDVTSNNILLNSELHAVVSDFGTARLLDPDSSNQTLQVGTYGYLAPELAYTMRVTEKCDVYSFGVVALETLMGKHPKELILSLLDSSNENIMIKDLLDSRIRLPLSQRDTQAIVQVVKLALACLHSNPKSRPSMQQVAHELSNFKQSSISFPFSEITVHQLIA 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc373g00006 919 FunFam Nuclear pore complex protein NUP107 19 175 - -
Stsc373g00006 919 SMART LRR_sd22_2 205 231 - -
Stsc373g00006 919 SMART LRR_sd22_2 349 370 - -
Stsc373g00006 919 SMART LRR_sd22_2 181 204 - -
Stsc373g00006 919 SMART LRR_sd22_2 544 565 - -
Stsc373g00006 919 SMART LRR_sd22_2 109 141 - -
Stsc373g00006 919 SMART LRR_sd22_2 397 423 - -
Stsc373g00006 919 SMART LRR_sd22_2 253 274 - -
Stsc373g00006 919 SMART LRR_sd22_2 445 464 - -
Stsc373g00006 919 PANTHER LEUCINE RICH REPEAT KINASE 2 725 901 - -
Stsc373g00006 919 Gene3D Ribonuclease Inhibitor 328 602 IPR032675 -
Stsc373g00006 919 Gene3D Ribonuclease Inhibitor 220 327 IPR032675 -
Stsc373g00006 919 Pfam Leucine rich repeat 111 170 IPR001611 GO:0005515
Stsc373g00006 919 Pfam Leucine rich repeat 328 386 IPR001611 GO:0005515
Stsc373g00006 919 Pfam Leucine rich repeat 399 458 IPR001611 GO:0005515
Stsc373g00006 919 SUPERFAMILY L domain-like 42 366 - -
Stsc373g00006 919 PRINTS Leucine-rich repeat signature 373 386 - -
Stsc373g00006 919 PRINTS Leucine-rich repeat signature 136 149 - -
Stsc373g00006 919 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 176 275 - -
Stsc373g00006 919 SMART LRR_typ_2 181 205 IPR003591 -
Stsc373g00006 919 SMART LRR_typ_2 229 253 IPR003591 -
Stsc373g00006 919 SMART LRR_typ_2 349 373 IPR003591 -
Stsc373g00006 919 SMART LRR_typ_2 133 156 IPR003591 -
Stsc373g00006 919 SMART LRR_typ_2 397 420 IPR003591 -
Stsc373g00006 919 SMART LRR_typ_2 109 132 IPR003591 -
Stsc373g00006 919 SMART LRR_typ_2 446 469 IPR003591 -
Stsc373g00006 919 SMART LRR_typ_2 325 348 IPR003591 -
Stsc373g00006 919 SMART LRR_typ_2 277 301 IPR003591 -
Stsc373g00006 919 SMART LRR_typ_2 421 445 IPR003591 -
Stsc373g00006 919 ProSiteProfiles Leucine-rich repeat profile. 546 567 IPR001611 GO:0005515
Stsc373g00006 919 SUPERFAMILY Protein kinase-like (PK-like) 660 897 IPR011009 -
Stsc373g00006 919 Pfam Protein kinase domain 725 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00006 919 Gene3D Ribonuclease Inhibitor 19 219 IPR032675 -
Stsc373g00006 919 ProSiteProfiles Leucine-rich repeat profile. 423 445 IPR001611 GO:0005515
Stsc373g00006 919 SUPERFAMILY L domain-like 275 563 - -
Stsc373g00006 919 ProSitePatterns Tyrosine protein kinases specific active-site signature. 754 766 IPR008266 GO:0004672|GO:0006468
Stsc373g00006 919 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 302 567 - -
Stsc373g00006 919 Gene3D Transferase(Phosphotransferase) domain 1 722 912 - -
Stsc373g00006 919 FunFam MDIS1-interacting receptor like kinase 2 711 903 - -
Stsc373g00006 919 ProSitePatterns Protein kinases ATP-binding region signature. 684 706 IPR017441 GO:0005524
Stsc373g00006 919 Pfam Leucine Rich repeat 545 559 IPR001611 GO:0005515
Stsc373g00006 919 ProSiteProfiles Protein kinase domain profile. 587 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00006 919 Gene3D Transferase(Phosphotransferase) domain 1 661 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc373g00006 Stsc-Chr373 24398 27409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc373g00006 41 802 Receptor kinase-like Gene Family AT4G08850 34.234 1.56e-137 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc373g00006 Pkinase 2.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc373g00006 - - aprc:113851126 858.981