Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc373g00005 ATGATTTCTAAGTGTAGTAGTAAATTTGCTTTGCTTATTATTATAGCAGCAGCAGCACTTCTGTTTTCCACCACAGCCTCTTATTATGTGATACTCCCTCCCAACAAAACCGCCGTGGCGCCGCCTTCGGTTTCCTTCAATAATTCAGAGAGACAGGCTTTGCTACAGAGTGGTTGGTGGAGTCATTACCACAATATCTCAAACTCAAACCATTGCCATTGGGTTGGCATCTTCTGTAAAACAGCTGGAAGTGTTTCAGAGATTGATGGATGGTTATTGAATGTTAATTCCAAATCATTGCAGCTACAGAACTTGAATCTAACAGCCTTACCCAATTTGATCCATTTGGATCTTCATGGAATGGGGCTTATAGGAAGCATTCCTAAAGAAGTTGGTACTATCACAAAGCTTGCAGGTCTTGATCTGTCCAATAATAATCTCCATGGTAAGCTGCCTCCAACACTTTCAAACCTTACTCAACTTGAGTACCTTAATGTTTCTTTCAATTCTCTTAGTGGCACCATCCCTTATGGTTTTGGTCAATTGAAGGAGTTGACCTACTTCTCTCTTGCTTCAAACCAAATTGAAGGTTCCATACCAGTAGAACTATGCAATGTGAATTTGGAATATCTCAACCTTGGATCAAATCAAATTGGAGGTTCTATACCAGCACAGATAAGGAATCTAACAAGGCTATTCGCGTTGTATCTTTCGAATAACTCATTTTCTGGTTCAATCCCCTCTCAAATTGTAGCTTTAACTCAGTTGCAAGAGTTGTACATAGAACTCAATCAAATTAATGGTTCTATTCCTTCACAGTTTATGAATTTGACCATGCTAAAAGTTTTAGATATTTCTAGAAACAAGTTGTCCGGTGTTATTCCTCCGGAAATTTTTTTCCTTCCCAACTTGGATTCTTTACTTCTCTCATCAAATCAATTGTCTGGTTCAATACCATCAAATATTGCAAACACAAACATTTCACATCTAAATATCTCTCACAATAAGCTAACAGGGCCTATTCCGTTTCCTATGCACACTTGTTCTTCTGATTTGACACTGGATTTAAGCTACAATTTGTTGAATGGAAGCATAGTTTCTCAAACTGGTTGTGTTGTTAGCCTTAACCTTAGTCATAATTTTCTCAGTGGTAAACTGCACAAGGAACTAGCTAATCTTACACACTTAAACCTTTCATACAATTCCTTTGACTTTTCTCAAGATATCATCAACTCAAAGTCACAGTTGCCTGATTACTGTTACTTTCATGAAGACTCCTTAATTGGTTGCAACACACCAAGCTTCAAATCCTGTGATTCTATCTCGCAAACCAGAAAAAGTAACTACCTGCTTCAAAGGACTGGTAAAACTAAGTTCTACCTCCTTGTAATAGCTCTTCCTGTCACCAGTATCATTCTTTTCACAATTCTAGCAGCATTTCTTTGCACAAGACAGAAAAAGAGTAGAAAAACTGAGGAAAGAACAGAAAAGAATGGAGACATGTTTTCTGTATGGAACTTTGATGGGAAAATTGCATTTGAAGACATCATTGAAGCAACACAGGACTTTGATATCAGATACTGCATAGGAACTGGTGCATATGGCAGTGTGTACAGAGCACAACTTCCAAGTGGCAAAGTTGTTGCACTGAAGAAACTTCACCAAAGGGAGTCACAAAATCCATCTTTTGACAAGAGCTTCCGCAACGAGAGGAAGCTATTTTATGCATTGAGCATTGATGATGAAGCTAAGGAGCTAAGTTGGAGCCAGAGGGTGAATATCATTACCGGAACGGCGAATGCTTTGGCTTACATGCATCATGATTGTTACCCACCAATAGTTCACAGAGATTTAACAAGCAGCAACATTTTGTTGAACTCAGAGTTGCATGCTGTTGTCTCAGACTTTGGCACTGCTAGACTTCTTGATCCGGATTCTTCAAATCAGACATTACAAGTTGGAACATATGGATATCTTGCACCAGAATTGGCCTACACATTGACTGTGACAGAAAAATGTGATGTGTACAGTTTTGGAGTGGTGGCATTGGAAACATTAATGGGAAAACACCCAGGAGATCTAATCTTGTCTTTGTTAGATTCTTCTAACAAAAACATAATGGTAAAAGATATCTTGGATTCACGCATTGGTTTACCATTATGTCAAAAAGACACTGAAGCAATAATACAGGTGGTAAAATTGGCATTGGCATGCTTGCACTCTAATCCAAAGTTAAGACCATCAATGCAGCAAGTGGCTCATGAACTTTCTAATTTCAAACAATCATCACTGCCTTTTCCTTTCTGTGAAATCACAGTCCATCAATTGATAGCTTAG 2337 0.3843 MISKCSSKFALLIIIAAAALLFSTTASYYVILPPNKTAVAPPSVSFNNSERQALLQSGWWSHYHNISNSNHCHWVGIFCKTAGSVSEIDGWLLNVNSKSLQLQNLNLTALPNLIHLDLHGMGLIGSIPKEVGTITKLAGLDLSNNNLHGKLPPTLSNLTQLEYLNVSFNSLSGTIPYGFGQLKELTYFSLASNQIEGSIPVELCNVNLEYLNLGSNQIGGSIPAQIRNLTRLFALYLSNNSFSGSIPSQIVALTQLQELYIELNQINGSIPSQFMNLTMLKVLDISRNKLSGVIPPEIFFLPNLDSLLLSSNQLSGSIPSNIANTNISHLNISHNKLTGPIPFPMHTCSSDLTLDLSYNLLNGSIVSQTGCVVSLNLSHNFLSGKLHKELANLTHLNLSYNSFDFSQDIINSKSQLPDYCYFHEDSLIGCNTPSFKSCDSISQTRKSNYLLQRTGKTKFYLLVIALPVTSIILFTILAAFLCTRQKKSRKTEERTEKNGDMFSVWNFDGKIAFEDIIEATQDFDIRYCIGTGAYGSVYRAQLPSGKVVALKKLHQRESQNPSFDKSFRNERKLFYALSIDDEAKELSWSQRVNIITGTANALAYMHHDCYPPIVHRDLTSSNILLNSELHAVVSDFGTARLLDPDSSNQTLQVGTYGYLAPELAYTLTVTEKCDVYSFGVVALETLMGKHPGDLILSLLDSSNKNIMVKDILDSRIGLPLCQKDTEAIIQVVKLALACLHSNPKLRPSMQQVAHELSNFKQSSLPFPFCEITVHQLIA 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc373g00005 778 ProSiteProfiles Protein kinase domain profile. 523 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00005 778 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 110 756 - -
Stsc373g00005 778 SMART LRR_sd22_2 205 231 - -
Stsc373g00005 778 SMART LRR_sd22_2 182 203 - -
Stsc373g00005 778 SMART LRR_sd22_2 301 324 - -
Stsc373g00005 778 SMART LRR_sd22_2 134 166 - -
Stsc373g00005 778 SMART LRR_sd22_2 253 279 - -
Stsc373g00005 778 Gene3D Ribonuclease Inhibitor 207 434 IPR032675 -
Stsc373g00005 778 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 206 441 - -
Stsc373g00005 778 Gene3D Phosphorylase Kinase; domain 1 482 575 - -
Stsc373g00005 778 FunFam Nuclear pore complex protein NUP107 45 201 - -
Stsc373g00005 778 ProSitePatterns Tyrosine protein kinases specific active-site signature. 613 625 IPR008266 GO:0004672|GO:0006468
Stsc373g00005 778 Gene3D Transferase(Phosphotransferase) domain 1 576 765 - -
Stsc373g00005 778 PRINTS Leucine-rich repeat signature 277 290 - -
Stsc373g00005 778 PRINTS Leucine-rich repeat signature 137 150 - -
Stsc373g00005 778 Pfam Leucine rich repeat 255 314 IPR001611 GO:0005515
Stsc373g00005 778 Pfam Leucine rich repeat 136 195 IPR001611 GO:0005515
Stsc373g00005 778 Pfam Leucine Rich repeat 324 339 IPR001611 GO:0005515
Stsc373g00005 778 Pfam Leucine Rich repeat 205 220 IPR001611 GO:0005515
Stsc373g00005 778 Pfam Leucine Rich Repeat 392 408 IPR001611 GO:0005515
Stsc373g00005 778 SMART LRR_typ_2 277 301 IPR003591 -
Stsc373g00005 778 SMART LRR_typ_2 182 206 IPR003591 -
Stsc373g00005 778 SMART LRR_typ_2 229 253 IPR003591 -
Stsc373g00005 778 SMART LRR_typ_2 390 413 IPR003591 -
Stsc373g00005 778 SMART LRR_typ_2 158 181 IPR003591 -
Stsc373g00005 778 SUPERFAMILY RNI-like 99 413 - -
Stsc373g00005 778 SUPERFAMILY Protein kinase-like (PK-like) 506 756 IPR011009 -
Stsc373g00005 778 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Stsc373g00005 778 FunFam MDIS1-interacting receptor like kinase 2 569 762 - -
Stsc373g00005 778 Pfam Protein kinase domain 582 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00005 778 Gene3D Ribonuclease Inhibitor 45 206 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc373g00005 Stsc-Chr373 13842 16436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc373g00005 113 661 Receptor kinase-like Gene Family AT4G08850 35.185 3.70e-99 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc373g00005 Pkinase 1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc373g00005 - - gmx:100789677 735.332