Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc373g00004 ATGGTGGCTAAGTGTAGTAACTTTGCTTTGCTTATTATTATAGCAGCAGCAGCACTTTTGTTTTCCACCACAGCCTCTTATGTCATATCCCCACCACCAAATGCTTCGTGTTCCTTCAATAATTCGGAAAGACAGGCTTTGATACAGAGCGGTTGGTGGAGTTATTACCTCAGTATCTTAAACCATTGCCATTGGAAAGGCATCGGCTGTGATGAAACTGGAAATGTCTTACATATTAATGGATCGCTATTGGATATTAATCCCAATTCATTGTTTCTACAGAACTTGAATCTCACTGCCTTCCCTAGTTTGGTCTCTCTGGATCTACATGGAGTGCGGTTTGGAGGAAGCATCCCCAAAGAAGTTGGCACTCTCACAAAGCTTGTCAGTCTTGACTTGTCGAATAATAATCTTCATGGTAAGCTGCCTCCAACACTTTCAAACCTCACTCAACTTAGAGAGTTTGATGTTTCAGGGAATTCTTTTAGTGGTAGCATTCCTTCTACTTTTGGTCAATTGGAGGAGTTGACCTCTCTCTCTCTTGATTTAAACCAAATAGAAGGTCCTATACCACTAGAACTAGGGAATTTGAAATATATCCAAGTATTATCTCTTTCAAATAATTTACTTAATGGTTCAATTCCCTCTACTTTGGGACAGCTGCAGAGTTTAACACATCTTTACCTGGATTCCAGCCGAATAGAAGGTCCTATACCACTAGAACTAGGGAATTTGAAACATATTGAAGTATTGTCTCTTTCACTTAATTTTCTTAGTGGTTCAATTCCCTCTACTTTGGGACAGCTGCAGAGTTTAACACATCTTTACCTGGATTCCAACCGAATAGAAGGTCCTATACCACTAGAACTAGGGAATTTGAAACATATTGAAAGTTTATCACGTCTTGACCTTGCTTCAAACCAAATACATGGTCCTATACCGCCACAACTAGGGAATTTGACAAGGTTATATTATTTAAGTCTCTCCAATAATTTGTTGACAGGCGTAATTCCTTCAACTTTCGGACAGTTAGTGAAGTTGAATAAGCTCTACTTTGGATCAAATCAAATTGGAGGTTCTATACCGATACAGATAGGGAATCTAACAAGCTTAGTGTTTTTAGATCTTTCGGAGAACTACTTTTCTGGTTCAATCCCCTTTCAAATAGGAGCTTTAACTCAGTTGCAGGAGTTGCACATAGAACTCAATCAAATTGATGGTTCTATTCCTCCACAATTTACAAATTTGTCTAATCTAGAATTTTTAAATCTTTCTGATAATAAGCTGTCTGGTGCTATTCCTCCACAAATTTTTCTACTTCTCAACTTGAGCTCTTTGGTTCTTTCATCAAATCAATTGTCTGGTATAATACCTTCAGATTTTGCAAGCACAAGTATTTCATTTCTAGATCTCTCTCACAACAAGCTAATAGGATCTATTCCATATACTACTGATAATTATTGTTCCTCAGGATTGATGATAACACTAGATTTAAGCTGCAACTTGTTGAATGGAAGCATTGCTTCCCAAGCTGGTTGTGTTTATGACCTTAACCTTAGTCATAATTTTCTTCAAGGTGAGGTCCCAGTTTTGTTTGGAGAGAATAATTGGCTATATAGTTTGGATCTTAGTTATAACAACTTCACAGGTATATTACACAAGGAACTTGCCGCAATAGGCTATATAAACCTTTCATACAATTCCTTTGACTTTTCTCAAGACATTGCCATGGAGTCACAGTTACCTAACTATTGTTCTTTTAATCAAGACTCCTTAATCGGTTGCAACACACCAAGCTTCACATCCTGCCATTCTGTCCCACAAACTAGGAAAATTAAGCACCTCCTTCTAATTGCTCTTCCTGTAACCAGCATCATTCTCTTTGTCACAATTCTAGCAATATTGTTTTTCGCAAGACGCATCAAAAGCAGAAAAATTGAGGAATTGAAAGCAAAGAATGGAGACTTGTTTTCCATATGGAACTATGATGGTAAAATTGCATTTGAAGACATCATTGAAGCAACACAGGACTTTGATATCAGATACTGCATAGGAACTGGTGCATATGGCAGTGTGTACAGAGCACAACTTCCAAGTGGCAAAGTTGTTGCATTGAAGAAACTTCACCAAAGGGAGTCTCAAAATCCATCTTTTGACAAGAGCTTCCACAATGAGGTCAAAATGTTATCACAAATCGTTCATAGAAACATAGTCAAGCTTCATGGTTTTTGTATCCACAATCGGTGCATGTTTTTGGTATACGAATACATGGAAAGAGGAAGCTTGTTTTATGCCTTGAGAATTGATGATGAAGCTGAGAAGCTAAGTTGGAGCCAGAGGGTGAATATCATTATCGGAACAGCGAATGCTTTGTCTTATATGCATCATGATTGTTACCCTCCAATAGTTCACAGAGATGTAACAAGCAGCAACATTTTGTTGAACTCAGAGTTGCGTGCAGTTGTCTCAGACTTTGGCACTGCTAGACTTCTTGATCCTGATTCTTCAAACCAAACCTTGCAAGTTGGAACATATGGATATCTTGCCCCAGAGTTTGCATACACATTGACTGTAACAGAGAAATGTGATGTATACAGTTTTGGAGTGGTGGCATTGGAAACAATAATGGGAAGACACCCAGGAGATCTAATCTTGTCTTTGTTAGATTCTTCAAACAAAAACATGATGGTAAAAGATATCTTGGATTCAAGAATCCGTTTACCATTATGTCAAAGAGATGATCAAGCTATAGTTCAGGTGGTAAGACTGGCATTGGCATGCTTGCACTCTAATCCAAAGTCAAGACCAACAATGCAGCAGGTGGCTCATGAACTTTCTAATTTCAAACAATCATCACTGCCTTTGCCTTTATCTGAAATCACAGTTCATCAGCTGATAGCTTTTTAG 2907 0.3808 MVAKCSNFALLIIIAAAALLFSTTASYVISPPPNASCSFNNSERQALIQSGWWSYYLSILNHCHWKGIGCDETGNVLHINGSLLDINPNSLFLQNLNLTAFPSLVSLDLHGVRFGGSIPKEVGTLTKLVSLDLSNNNLHGKLPPTLSNLTQLREFDVSGNSFSGSIPSTFGQLEELTSLSLDLNQIEGPIPLELGNLKYIQVLSLSNNLLNGSIPSTLGQLQSLTHLYLDSSRIEGPIPLELGNLKHIEVLSLSLNFLSGSIPSTLGQLQSLTHLYLDSNRIEGPIPLELGNLKHIESLSRLDLASNQIHGPIPPQLGNLTRLYYLSLSNNLLTGVIPSTFGQLVKLNKLYFGSNQIGGSIPIQIGNLTSLVFLDLSENYFSGSIPFQIGALTQLQELHIELNQIDGSIPPQFTNLSNLEFLNLSDNKLSGAIPPQIFLLLNLSSLVLSSNQLSGIIPSDFASTSISFLDLSHNKLIGSIPYTTDNYCSSGLMITLDLSCNLLNGSIASQAGCVYDLNLSHNFLQGEVPVLFGENNWLYSLDLSYNNFTGILHKELAAIGYINLSYNSFDFSQDIAMESQLPNYCSFNQDSLIGCNTPSFTSCHSVPQTRKIKHLLLIALPVTSIILFVTILAILFFARRIKSRKIEELKAKNGDLFSIWNYDGKIAFEDIIEATQDFDIRYCIGTGAYGSVYRAQLPSGKVVALKKLHQRESQNPSFDKSFHNEVKMLSQIVHRNIVKLHGFCIHNRCMFLVYEYMERGSLFYALRIDDEAEKLSWSQRVNIIIGTANALSYMHHDCYPPIVHRDVTSSNILLNSELRAVVSDFGTARLLDPDSSNQTLQVGTYGYLAPEFAYTLTVTEKCDVYSFGVVALETIMGRHPGDLILSLLDSSNKNMMVKDILDSRIRLPLCQRDDQAIVQVVRLALACLHSNPKSRPTMQQVAHELSNFKQSSLPLPLSEITVHQLIAF 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc373g00004 968 CDD STKc_IRAK 684 945 - -
Stsc373g00004 968 ProSiteProfiles Leucine-rich repeat profile. 418 440 IPR001611 GO:0005515
Stsc373g00004 968 SMART LRR_sd22_2 344 370 - -
Stsc373g00004 968 SMART LRR_sd22_2 440 461 - -
Stsc373g00004 968 SMART LRR_sd22_2 392 421 - -
Stsc373g00004 968 SMART LRR_sd22_2 125 151 - -
Stsc373g00004 968 SMART LRR_sd22_2 269 301 - -
Stsc373g00004 968 SMART LRR_sd22_2 173 194 - -
Stsc373g00004 968 FunFam MDIS1-interacting receptor like kinase 2 757 951 - -
Stsc373g00004 968 Gene3D Ribonuclease Inhibitor 38 191 IPR032675 -
Stsc373g00004 968 PRINTS Leucine-rich repeat signature 416 429 - -
Stsc373g00004 968 PRINTS Leucine-rich repeat signature 128 141 - -
Stsc373g00004 968 FunFam Leucine-rich repeat receptor-like protein kinase TDR 299 569 - -
Stsc373g00004 968 SUPERFAMILY L domain-like 296 507 - -
Stsc373g00004 968 Pfam Leucine rich repeat 322 380 IPR001611 GO:0005515
Stsc373g00004 968 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Stsc373g00004 968 Gene3D Ribonuclease Inhibitor 192 299 IPR032675 -
Stsc373g00004 968 FunFam Leucine-rich repeat receptor protein kinase MSP1 641 756 - -
Stsc373g00004 968 FunFam Nuclear pore complex protein NUP107 36 191 - -
Stsc373g00004 968 Pfam Protein kinase domain 683 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00004 968 Gene3D Ribonuclease Inhibitor 300 604 IPR032675 -
Stsc373g00004 968 Gene3D Transferase(Phosphotransferase) domain 1 757 954 - -
Stsc373g00004 968 SUPERFAMILY Protein kinase-like (PK-like) 664 945 IPR011009 -
Stsc373g00004 968 ProSitePatterns Tyrosine protein kinases specific active-site signature. 802 814 IPR008266 GO:0004672|GO:0006468
Stsc373g00004 968 SMART LRR_typ_2 197 221 IPR003591 -
Stsc373g00004 968 SMART LRR_typ_2 442 463 IPR003591 -
Stsc373g00004 968 SMART LRR_typ_2 344 368 IPR003591 -
Stsc373g00004 968 SMART LRR_typ_2 320 343 IPR003591 -
Stsc373g00004 968 SMART LRR_typ_2 416 440 IPR003591 -
Stsc373g00004 968 SMART LRR_typ_2 269 293 IPR003591 -
Stsc373g00004 968 SMART LRR_typ_2 149 172 IPR003591 -
Stsc373g00004 968 SMART LRR_typ_2 392 415 IPR003591 -
Stsc373g00004 968 SMART LRR_typ_2 125 148 IPR003591 -
Stsc373g00004 968 ProSiteProfiles Protein kinase domain profile. 678 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc373g00004 968 SUPERFAMILY L domain-like 465 583 - -
Stsc373g00004 968 ProSitePatterns Protein kinases ATP-binding region signature. 684 706 IPR017441 GO:0005524
Stsc373g00004 968 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 215 298 - -
Stsc373g00004 968 Gene3D Phosphorylase Kinase; domain 1 638 756 - -
Stsc373g00004 968 PANTHER LEUCINE RICH REPEAT KINASE 2 242 949 - -
Stsc373g00004 968 SUPERFAMILY L domain-like 37 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc373g00004 Stsc-Chr373 9674 12729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc373g00004 103 850 Receptor kinase-like Gene Family AT4G08850 38.608 2.80e-162 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc373g00004 Pkinase 5.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc373g00004 - - aprc:113851126 1022.31