Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc372g00008 ATGGCATCGGAGCTTCAATTGCCTCCTGGGTTCCGTTTTCACCCCACCGATGAGGAGCTCGTGATGCACTATCTCTGTCGCAAATGCACTTCTCAAGAAATCGCCGTTCCGATCATAGCCGAAATCGACCTGTACAAATATGACCCTTGGGACCTCCCTGGTATGGCATCATATGGGGAAAAAGAGTGGTACTTTTTTTCTCCGAGGGATCGGAAGTACCCCAACGGTTCTCGACCCAACCGGGCTGCCGGGACTGGGTACTGGAAGGCAACTGGGGCTGACAAGCCCATTGGTCAGCCTAAGCCGGTTGGAATCAAGAAAGCTTTGGTTTTTTACGCAGGGAAGGCCCCCAAAGGAGATAAGACCAATTGGATCATGCATGAATATAGACTGGCAGACGTAGATCGGTCCGTTCGCAAGAAGAATAGCCTCAGGCTGGATGACTGGGTCTTGTGTCGCATCTACAATAAGAAAGGAACAATCGAGAAGCAACCGAGCAGCGGCGTAAGCACCGTGGTGAACGAGATACCCGAATCTTTTGAAGTCGAAGACAAGAAGCCGGACATAGTTCCACATGGCGGCGGCGCAGTACTTCCGCCGCATCCTCCTCCTCCTGCAGCGCAGGCTTCGGGAGGAGGTGTGACGATGGACTACATGTACTTCGACAACTCCGATTCGATTCCGAAGCTTCACACGGACTCGAGCTGCTCGGAGCAGGTGGTGTCGCCGGAGTTTGCAACCGAGGTTCAGAGTGAGCCCAAGTGTTACGATGCCAAGTGTTACGATCAGTGGGAAAAGAACCTCGAATGTTCGTTTAATTACCTCGATGCCACTATGGCTAACGGTTTCGGATTCCAGTTCCAGGGTAACAATCAGATGCTCCAGGACATGTTCATGAACCTGCAGAAACCGTTTTGA 918 0.5207 MASELQLPPGFRFHPTDEELVMHYLCRKCTSQEIAVPIIAEIDLYKYDPWDLPGMASYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGQPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGTIEKQPSSGVSTVVNEIPESFEVEDKKPDIVPHGGGAVLPPHPPPPAAQASGGGVTMDYMYFDNSDSIPKLHTDSSCSEQVVSPEFATEVQSEPKCYDAKCYDQWEKNLECSFNYLDATMANGFGFQFQGNNQMLQDMFMNLQKPF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc372g00008 305 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Stsc372g00008 305 FunFam NAC transcription factor 16 161 - -
Stsc372g00008 305 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 233 - -
Stsc372g00008 305 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Stsc372g00008 305 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Stsc372g00008 305 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc372g00008 Stsc-Chr372 37496 39669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc372g00008 1 305 NAC Transcription Factor Family AT1G01720 68.710 1.11e-141 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc372g00008 NAM 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc372g00008 - - gmx:100805768 464.922