Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc372g00006 ATGGCGGAGACAATCTCTCCCATGGAAATTGACAGCAACAAAACCCCTGTCTCTTCAAGGACCGACAAGGGCAAGAGCGTCTTTATCGCTGGAAACACCTCAGGGAACGGCAAGGCCACTCCGTGGGTCGAGAAGTACCGCCCTCAATCCCTAGATGATGTTGCTGCTCACCGCGATATCGTCAGTACCATTGATAGGCTGACTACTGAGAACAGATTGCCACATCTGCTACTGTATGGTCCACCTGGAACGGGCAAAACTTCGACTATTCTTGCTGTGGCACGTAAACTCTATGGTGCACAGTACCACAATATGATTTTGGAGCTGAATGCCTCTGATGATAGAGGAATTGATGTTGTACGGCAGCAGATTCAAGATTTTGCTAGCACCCAGAGCTTATCATTTGGTGCAAAGGCATCAGTAAAATTGGTCTTGCTAGATGAAGCAGATGCTATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAGTATACAAAAAGTACAAGGTTTGCACTTATCTGCAATCATGTAAATAAGATTATCCCTGCCCTGCAATCAAGGTGCACTCGGTTTCGGTTTGCCCCTCTTGATGAAGTCCATGTCACTGATAGACTGAAACATGTTATTAAAGCTGAAGGGCTTGATGTTGAAGACAGTGGCCTAGCTGCGCTTGTTCGGCTTAGCAACGGTGATATGAGAAAAGCTTTGAACATTCTTCAGTCAACACATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTATACCTGTGCACTGGAAATCCATTGCCCAAAGATGTTGAGCAAATATCTTACTGGCTGCTAAATGAACAATTTTCAGATAGTTTTAAAAGAATACATGAAATCAAGACAAGGAAAGGATTGGCCCTGGTAGACATTGTGAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTTCAGATGTCCGCGTACAGTTGATTAATGATTTGGCAGATATAGAGTACAGGTTAAGTTTTGGGTGCAATGACAAGCTTCAGCTTGGTTCAGTTATCGCTACATTTACTCGAGCTAGATCTGCACTGGTTGCTGCTGCTAAATAG 1092 0.4359 MAETISPMEIDSNKTPVSSRTDKGKSVFIAGNTSGNGKATPWVEKYRPQSLDDVAAHRDIVSTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDEVHVTDRLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDVEQISYWLLNEQFSDSFKRIHEIKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSVIATFTRARSALVAAAK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc372g00006 363 CDD AAA 71 198 - -
Stsc372g00006 363 Gene3D - 34 198 IPR027417 -
Stsc372g00006 363 MobiDBLite consensus disorder prediction 1 22 - -
Stsc372g00006 363 CDD HLD_clamp_RFC 199 261 - -
Stsc372g00006 363 Gene3D - 201 263 - -
Stsc372g00006 363 FunFam Replication factor C subunit 5 264 361 - -
Stsc372g00006 363 SMART AAA_5 72 202 IPR003593 GO:0016887
Stsc372g00006 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Stsc372g00006 363 FunFam Replication factor C subunit 5 34 199 - -
Stsc372g00006 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 345 - -
Stsc372g00006 363 MobiDBLite consensus disorder prediction 8 22 - -
Stsc372g00006 363 FunFam Replication factor C subunit 5 201 263 - -
Stsc372g00006 363 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Stsc372g00006 363 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
Stsc372g00006 363 Gene3D - 264 361 - -
Stsc372g00006 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc372g00006 Stsc-Chr372 31139 36333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc372g00006 1 363 Core DNA Replication Machinery Family AT1G77470 77.898 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc372g00006 K10756 - gmx:100782652 631.713