Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc371g00002 ATGCAGCTATTGGAAGAAACCTTCTCAAGTGGACAAATTGGTGCCCGAAGAATATACACAACCATTAAGTTAGGGAGCACTATAGTGGGCAAGACTAGAGCCATAAACCAGAGTGAAAACTTCAACTTTCAGTGGCATCAATCTTTAAGAATTTGCACTGCTCATGTTGCAACTGAAGTTGTTTTTCATATCAAAGAAGATGACCCAATTGGTGCAAAAGTGATTGGAAGAGCATATTTCCCTGTGGAGGAGTTGGTAAATGGAGAAAATAAGGATATATGGCTCCAAATCTTGAATAAGAAGCATAAACCTCTTAGAGCAAAGCCTAGATTCCATGTGAGATTACAGTTTTTTAATGTCACTAAGGATGTTAACTGGTCTCAAGGGATCAAAAGTGTTGATTTTGCAGGGCTTACTCATTCATATTTTCCTCAAAGAACTGGTTGTAGAGTCACACTTTACCAAGATACTCACATTCCAAACACGTTTTTCCCTGAAATCTTGCTAAGTAAGGGTAGGGAATCAAGTTGCAAGAAGAAGGAACCAAGTTGTGATTTGAATTTGACACTTGGTGAGCTTCTTATAAAGAAGGCCGATGAAGGTGTTAAGGTTCTTATGCTTGTTTGGGATGACAGAACTTCAATTAAGTGGCTAAAGAATGATGGGGTTATGACTACTCATGATGAAGACACAGAAAGTTATTTCAATGGAAGTGGAGTGCATTGTGCTCTATGTCCTCGAAATCCTGATAAAGGGGAAAGCCTTATCCAAGGAACAGAGGTTGCTTCCATGTTTACACATCATCAAAAGATTGTAATCGTCGATAGCGATATGCAAAATGGAAGATCAGATTGTAGGAGAAGAATTCTGCGTTTCATTGGTGGCATTGATCTATGTGATGGGAGATATGATACACCCTTCCATTCGATTTTCGGTACCTTAGGGACAATACACCACGATGATTTTCACCAGCCAAACTTCGAAGGAGCTTCAATCGATAAAGGTGGACCGCGAGAGCCTTGGCATGACATACATTGCCGGCTAGAAGGACCGATCGCGAGGGATGTTCTAAAGAATTTCGAGCAAAGGTGGAGGAAACAAGGTAAGAAGGATGTTTTTCTTGTTGAAATTGACTCACTTCTTGACACTTTTGTTCCAGCACCACTTGAAAAGTTCCCGGAAGATAATGAAGAAGCATGGAATGTTCAATTATTTCGATCGATCGACGGTGGAGCAGCTTTAGGCCTCCCAAATTCTGAAGAGGAAGTAGCAAAGTATGGCCTTATGAACCAAAAGGATAATATCTTTGAATGCAGCATCCAAAATGCTTATATTGCTGCTTATAGAAGAGCTAAGAGTTTTATCTATATAGAAAACCAGTACTTTATGGGAAGCTCTTTTGATTGGAATTCAGAGAACGTTCAAGTTCCAGAGGTGGGAGCTTTGCATCTTATTCCAAAGGAATTGTCTCTCAAGATTGTTAGCAAGATTGAAGCAGGAGAAAGGTTCAGTGTTTATATAGTGATTCCAATGTGGCCAGAGGGTATTCCTGAGAGTAACTCGGTTCAAAGCATGTTGAGTTGGCAGAAGCAAACCATGGATATGATGTACAGTGATGTAATCAAAGCCCTACAAGCCAAAGGGATTAGTGCTGACCCAAAAGATTATTTGAGTTTCTTTTGCCTTGGAAATCGTGAAAAGAAGAAAAGTGGTGAGTATGAACCTTCTAAAAAACCACAGCATTACTCAGATTATAGCAGAACTCAAGAAGCAAGAAGATTCATGATCTATGTACATGCCAAAATGATGATAGTTGATGATGAATACATAATTATTGGATCCGCCAATATCAATCAGAGATCAATAGATGGATCTAGGGATACAGAGATTGCCATGGGAGCTTATCAACCATGTCACATATCAAGAAACGAGCCAAGCAGGGGTCAGATACATGGGTTTAGAATGGCCTTGTGGTATGAGCACTTGGGTTTTCTAGATGGCTCTTTTCTTGTTCCTCAGAGTTTGGAATGTGTCAGACTTATAAACAACATTTCAACAAGGTATTGGGACCTTTATTGTAGTGAAACCCTTGATGATGACTTGCCTGGCCATTTGCTTAGCTATCCCATTAAAGTAACAGAATGTGGTAAGGTCACAACACATGTTGGTTTATTGGGTCCAAATCTGAACTTCCTTTTGTCTTAA 2205 0.3973 MQLLEETFSSGQIGARRIYTTIKLGSTIVGKTRAINQSENFNFQWHQSLRICTAHVATEVVFHIKEDDPIGAKVIGRAYFPVEELVNGENKDIWLQILNKKHKPLRAKPRFHVRLQFFNVTKDVNWSQGIKSVDFAGLTHSYFPQRTGCRVTLYQDTHIPNTFFPEILLSKGRESSCKKKEPSCDLNLTLGELLIKKADEGVKVLMLVWDDRTSIKWLKNDGVMTTHDEDTESYFNGSGVHCALCPRNPDKGESLIQGTEVASMFTHHQKIVIVDSDMQNGRSDCRRRILRFIGGIDLCDGRYDTPFHSIFGTLGTIHHDDFHQPNFEGASIDKGGPREPWHDIHCRLEGPIARDVLKNFEQRWRKQGKKDVFLVEIDSLLDTFVPAPLEKFPEDNEEAWNVQLFRSIDGGAALGLPNSEEEVAKYGLMNQKDNIFECSIQNAYIAAYRRAKSFIYIENQYFMGSSFDWNSENVQVPEVGALHLIPKELSLKIVSKIEAGERFSVYIVIPMWPEGIPESNSVQSMLSWQKQTMDMMYSDVIKALQAKGISADPKDYLSFFCLGNREKKKSGEYEPSKKPQHYSDYSRTQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSIDGSRDTEIAMGAYQPCHISRNEPSRGQIHGFRMALWYEHLGFLDGSFLVPQSLECVRLINNISTRYWDLYCSETLDDDLPGHLLSYPIKVTECGKVTTHVGLLGPNLNFLLS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc371g00002 734 PANTHER PHOSPHOLIPASE D 17 719 IPR015679 -
Stsc371g00002 734 SMART pld_4 263 302 IPR001736 GO:0003824
Stsc371g00002 734 SMART pld_4 594 621 IPR001736 GO:0003824
Stsc371g00002 734 Pfam Phospholipase D C terminal 668 722 IPR024632 -
Stsc371g00002 734 SUPERFAMILY Phospholipase D/nuclease 141 373 - -
Stsc371g00002 734 Gene3D C2 domain 4 130 IPR035892 -
Stsc371g00002 734 Gene3D Endonuclease Chain A 182 377 - -
Stsc371g00002 734 SUPERFAMILY Phospholipase D/nuclease 438 677 - -
Stsc371g00002 734 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 594 621 IPR001736 GO:0003824
Stsc371g00002 734 ProSiteProfiles C2 domain profile. 1 95 IPR000008 -
Stsc371g00002 734 Pfam Phospholipase D Active site motif 595 621 IPR001736 GO:0003824
Stsc371g00002 734 Pfam Phospholipase D Active site motif 264 302 IPR001736 GO:0003824
Stsc371g00002 734 Pfam C2 domain 17 96 IPR000008 -
Stsc371g00002 734 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 120 IPR035892 -
Stsc371g00002 734 Gene3D Endonuclease Chain A 398 640 - -
Stsc371g00002 734 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 263 302 IPR001736 GO:0003824
Stsc371g00002 734 PIRSF PLD_plant 2 180 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc371g00002 734 PIRSF PLD_plant 176 725 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc371g00002 Stsc-Chr371 18680 22465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc371g00002 4 724 Phospholipase D Gene Family (Wang group) AT3G15730 57.881 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc371g00002 K01115 - qsu:111988169 967.992