Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc36g00025 ATGGCATTTCACGTAGCTTGCCCAATTACATGTCGTAGAATCTGCTTCTGCGCGTTAGGGTTTCCGCGAGCTTTTCATGGAACAGAATCTTCCAATGGCTTCCTCAACGATGTTGCTGCTCTCGGCGAATTCCTCGCCGAGAATCGAAAGGACACTTCCACCGTCAAGGTTGCAGTTCCCAAGGTCGTGCCGCCGCCTCCGCCGCCGAATCCTACTCCGGATGGAGGAGGACCTGCTGCGGAAGAGGAGTCCGCTTCGATGAAGGCGAAACGCGTGGCTCTGCAGCGGAAGGGCGCCGCCGCCATGGTTGCCGCGGAGGAGTTTGCTCGCCGGTTTGAGTCCGGTGATGTTGCGGATGCATCTGTAAATCCTGTTGGGGAAGATCAGGGCCAACCCAATGCCAAAGTCTTTTGTCGAATGTGTAATCGCGTTGAAAATGAAGGAAGTGAGAGAGCAAAGAAGATGCTATCGTGTAAGAGTTGTAATAAGAAGTATCATAGGAATTGCTTGAGAAGTTGGGCACAAAATAGAGACTTATTTCATTGGAGCTCGTGGACCTGCAGGGCTTGCCGAATTTGTGAGGCTTGCAGAAGAACGGGTGATCCAAGTAAGTTCATGTTTTGCAAAAGGTGTGACGGTGCTTACCATTGTTATTGTCTGCAACCTCCTCATAAGAATGTTAGTACTGGGCCATATTTGTGCCCAAAACACACAAGGTGTCACAGTTGTGGATCCAATGTTCCTGGAAATGGGCTGAGTGTGAGGTGGTTTCTAGGGTACACCTGCTGTGATGCATGTGGAAGGTTGTTTGTGAAAGGCAACTACTGTCCAGTCTGTTTGAAG 843 0.503 MAFHVACPITCRRICFCALGFPRAFHGTESSNGFLNDVAALGEFLAENRKDTSTVKVAVPKVVPPPPPPNPTPDGGGPAAEEESASMKAKRVALQRKGAAAMVAAEEFARRFESGDVADASVNPVGEDQGQPNAKVFCRMCNRVENEGSERAKKMLSCKSCNKKYHRNCLRSWAQNRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLQPPHKNVSTGPYLCPKHTRCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc36g00025 281 PANTHER HL01030P-RELATED 87 280 - -
Stsc36g00025 281 ProSitePatterns Zinc finger PHD-type signature. 138 190 IPR019786 -
Stsc36g00025 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 190 IPR013083 -
Stsc36g00025 281 SMART PHD_3 192 238 IPR001965 -
Stsc36g00025 281 SMART PHD_3 137 191 IPR001965 -
Stsc36g00025 281 MobiDBLite consensus disorder prediction 60 87 - -
Stsc36g00025 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 239 IPR013083 -
Stsc36g00025 281 FunFam PHD finger family protein 132 247 - -
Stsc36g00025 281 MobiDBLite consensus disorder prediction 60 75 - -
Stsc36g00025 281 ProSiteProfiles Zinc finger PHD-type profile. 135 193 IPR019787 -
Stsc36g00025 281 SUPERFAMILY FYVE/PHD zinc finger 182 243 IPR011011 -
Stsc36g00025 281 SUPERFAMILY FYVE/PHD zinc finger 127 191 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc36g00025 Stsc-Chr36 197042 199820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc36g00025 192 235 C2H2 Transcription Factor Family AT3G01460 36.364 9.09e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc36g00025 - - pcin:129297866 434.876