Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc36g00018 ATGGAAGCCGCCGTGGTTGACATCGGGACTAAGCTACTCAAAGCTGGCTTCGCAATTCCCGATCAGCCTCCGGCCATGATAATTCCCACTCAGATGAAAAGAGTGCTTGATGATGATGGGTCTGTGACTGATGATAGTTCAGTAGCTGATAGTGTTACTGTTGATCCAGTGGTGCGAGGGTTTGTCAGAGATTGGGACGCCATTGAGGATTTATTGCATCATGTCTTGTATACTGGCCTTGGATGGGAAATTGGCAATGAAGGACAGATATTATTCACAGATCCACTCTGCACCCCCAAGGCCAACAAGGAACAGCTAGTACAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCAGAACAAGCAGTGTTATCACTTTATGCTGTGGGGCGTATCTCAGGGTGCACAGTCGATATTGGACATGGAAAAATAGATATTGCGCCAGTAATCGAGGGTGCTGTCCACNNNNNNNNNNGATTCGAATTTGGAGGTACTGATCTAACTAATTTCTTGGCACAAGAACTTGGAAAATCCAATCCACAAGTAAATATCAGCTTGTCTGATGTGGAGAGAATAAAAGAGCAATACTCATGTGCTGCTGAAGATGAATTAGCTTATCAAAAGACTGTATCTTGTCCTGTGGAGAAACATACTCTTCCTGATGGACAGGTAATAACAATTGGGAGAGAAAGATATACTATTGGTGAAGCTTTATTCCAGCCAAGTCTATTGGGTTTGGAGGCTCATGGCATCGTTGAGCAGCTTGTCCGTGCTGTTTCAACTGTGTTACCTGATAATCATCGGCAGCTGCTGGAAAATACTGTGGTTTGTGGAGGCACTTCTTCTATGACCGGTTTTGAAGAGAGATTTCAGAAGGAATGTAGCTTAAGTTCATCTGCCATTCAACCTGCCCTGGTTAAGCCTCCAGAGTACATGCCAGAGAACTTAACCCAGTATTCTGCATGGGTGGGAGGTGCCATACTAGCCAAAGTAGTTTTCCCTCAAAATCAACACATAACCAAGGGAGATTACGATGAAACCGGACCTTCCATTGTTCACCGGAAATGCTTCTAA 1083 0.4367 MEAAVVDIGTKLLKAGFAIPDQPPAMIIPTQMKRVLDDDGSVTDDSSVADSVTVDPVVRGFVRDWDAIEDLLHHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHXXXXFEFGGTDLTNFLAQELGKSNPQVNISLSDVERIKEQYSCAAEDELAYQKTVSCPVEKHTLPDGQVITIGRERYTIGEALFQPSLLGLEAHGIVEQLVRAVSTVLPDNHRQLLENTVVCGGTSSMTGFEERFQKECSLSSSAIQPALVKPPEYMPENLTQYSAWVGGAILAKVVFPQNQHITKGDYDETGPSIVHRKCF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc36g00018 360 Gene3D Actin; Chain A, domain 4 165 251 - -
Stsc36g00018 360 PRINTS Actin signature 216 232 IPR004000 -
Stsc36g00018 360 PRINTS Actin signature 47 69 IPR004000 -
Stsc36g00018 360 PRINTS Actin signature 102 115 IPR004000 -
Stsc36g00018 360 PRINTS Actin signature 127 146 IPR004000 -
Stsc36g00018 360 FunFam Actin-related protein 7 165 251 - -
Stsc36g00018 360 SUPERFAMILY Actin-like ATPase domain 2 140 IPR043129 -
Stsc36g00018 360 Gene3D - 5 354 - -
Stsc36g00018 360 PANTHER ACTIN 4 353 IPR004000 -
Stsc36g00018 360 SUPERFAMILY Actin-like ATPase domain 133 360 IPR043129 -
Stsc36g00018 360 FunFam Actin-related protein 7 4 129 - -
Stsc36g00018 360 Pfam Actin 2 360 IPR004000 -
Stsc36g00018 360 SMART actin_3 1 360 IPR004000 -
Stsc36g00018 360 CDD NBD_sugar-kinase_HSP70_actin 4 166 - -
Stsc36g00018 360 Gene3D - 125 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc36g00018 Stsc-Chr36 149097 152343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc36g00018 5 360 Cytoskeleton Gene Families AT3G18780 38.032 1.64e-71 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc36g00018 K16615 - gmx:100813266 630.943