Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc36g00008 ATGGTTTCGTGTTTTATTCCGCTCAACTTTGGAAAACTAAAGCGTCTTTGGAGTCGAAAGACGACTCAAACTCCATCTCAGCCTGAATCTCAATCATCCAAAACATCATCTTGGCTAGAATCAGAATCTGAGGCTTTACTCAAATGGAAACAAACCCTACCTCCACAACCAATTCTTGATTCATGGGTGAATGTGAATCAAAGTAGTCCATGTTCATGGAGAGGGATCACCTGTGATCCTCAAGGGAGTGTAACTACCATAAACTTAGCCTACACTGGACTTTCAGGTACCCTTCATAACCTTAACTTCTCTGCTTTCCCAAACCTTTTGATTCTTGATCTCAAAACGAATAACCTCACTGGAACTATACCACAAAACATTGGTGCCCTTTCAAAACTTCAGTTTCTTGATCTTTCTACCAACTACCTCAATGGAACTTTACCTCTTTCCATTGCAAATTTGACAAAAGTTCATGAACTTGATGTGTCTAGAAATGACATAACAGGAATCTTAGACCCTCTTTTGTTCCCTGATTCAAGTGATGATCCAAAAACTGGCCTAATTAGTATCAGGAATCTTCTGTTCCAAGATACCCTCTTAGGTGGAACACTTCCTAATGAAATTGGTAACATTAAGAACTTGACATTACTAGCTCTTGATGGTAACAATTTCTATGGTCCTATTCCACCTTCTCTAGGAAATTGCACACATTTAAGTGTTCTTAGACTTAATGAGAATCAATTCTCAGGTACAATACCTCCTAGTATTGGCAAGCTAACTAACTTAACTGATGTGAGGTTTTTCACAAATTACTTGAATGGCACGGTACCGAGAGAATTCGGGAACTTGTCTTCTTTGGTTGTCCTGCATCTTGCTGAGAACAATTTCATTGGTGAGTTGCCACCTCAAGTTTGCAAAAGTGGGAAGCTTGTGAATTTCAGTGCTGCTTATAACGGTTTCACCGGTCCGATTCCGGTTAGCCTTAGAAACTGTCCAAGCTTATACAGAGTTAGAATTGAGTACAACATGCTTACAGGGTATGCTGATGAGGATTTTGGAGTGTATCCTAATCTAACATACATTGATTTCAGTTACAACAGGATTCAGGGTGAGATATCTTCGAATTGGGCCGGCTGCGAAAACTTGCAGGTACTTAGAATGGCTGGGAATTCCATAAGTGGAAACATTCCGGCCGAGATTTTTCGGCTGAGCCAACTAGCAGAGCTTGATGTATCTTCCAACCAACTTTCTGGCGAGATTCCTCAAGAGATTGGTGATCCATCAACCTTGTATGAACTGAATTTCAGTGGCAATAGACTTTTTGGTGTGATACCGGTCGAATTTGGAAGGCTTTCGGGTTTGCAATCTTTGGACTTGTCAATGAACATGTTATTGGGACAAATCCCAAATACTATTGGTAACTTGAACAACTTGTTGAAACTGAATTTGAGCAACAATAACTTGAATGGCACAATCCCTTACCAGATTGGAAATCTTGCAGCCTTACAAGATTTCTTGGACTTGAGTTTCAACTCACTTTCAGGGAAAATACCTGATGATCTTGACAAGCTTGAGAATTTGATAAGCTTGAATATCTCTCATAACAATCTTTCAGGTTCTATTCCTGAGTCCATTACCAAAATGTTGAGCTTGTCATTCATCAACCTTTCCTACAATCATCTAGAAGGTCCTATGCCGAAGGGGCGCATATTCAACTCTTCTAGCACAGCAGATTTAAGCAACAATGAAAACTTATGTGGGAATATCAAAGGTTTGCAACCTTGTGATGTCTCAATCAATGTACCTTCTAGCACAAGTAACAAACACAAGGTTTTAGTGCCACTTCTTGCTTCCTTAGGAGGCGCTTTGTTTCTTTCGTTGCTCTGTGTTGCGATTTTCTTCTTCATCTACAAGCAAAATTCAGGATCATCAAGACAAAACTCGTTGAACAAGAGGCCTAATCCGTTCTCAATTTGGTACTTCAATGGCAGGGTTGTGTATGCAGACATAATTGAAGCTACCAAGAATTTTGACAGCGAATGCTGCATAGGAGAAGGAGCATTAGGACAAGTTTACAAAGCAGTAATGAAAGGAGGTCAAGTATTTGCTGTGAAAAAATTGAAATGTGATGAAGAAAACTTAGACAGTGAGAGCATAAAGACATTTAAGAATGAGGTAGCAGCCATGAATGAAACTCGCCACCGGAACATTGTGAAGCTCTATGGATTTTGCTCTGAAGGATTGCACACATTCTTGATCTATGAGTACATGGATAGAGGAAGCTTAGCAGATATGCTTGGGAATGATCTCAGGGCATTGGAACTAGACTGGCCTAAGAGAGTTGACATTGTTAAAGGCGTGGCGAGTGCTTTGTCTTACATGCATCACGATTGTAACCCACCATTGATTCATAGAGACATTTCAAGCAAGAATGTTTTGTTGTCATCTGATCTTAAGGCTCATGTCTCGGATTTCGGCACTGCCAGGTTCTTGAAGCCGAATTCGCCGATTTGGACAGTGTTCGCAGGCACATATGGTTATGCTGCTCCAGAACTTGCTTACACAATGGCAGTGACAGAGAAATGTGATGTGTTCAGTTTTGGGGTTTTGGCTTTGGAGGTTTTGATTGGAAGGCACCCTGGTGATCTTGTTTCTTATTTACAAACCACAACAAATCAAAGTATAAACTTCAAAGAGATTTTGGACCCAAGAGTCTCACCTCCTAATGATGATAAACATGTTCTTAAGGAACTAGCATTAATTGCTAATCTAAGTCTTTCTTGTTTACAAACAAATCCTCAAACCAGACCAACAATGAGAACTGTAGCTCAGTTGCTTGACATGGGCAATAATTCATAA 2859 0.4008 MVSCFIPLNFGKLKRLWSRKTTQTPSQPESQSSKTSSWLESESEALLKWKQTLPPQPILDSWVNVNQSSPCSWRGITCDPQGSVTTINLAYTGLSGTLHNLNFSAFPNLLILDLKTNNLTGTIPQNIGALSKLQFLDLSTNYLNGTLPLSIANLTKVHELDVSRNDITGILDPLLFPDSSDDPKTGLISIRNLLFQDTLLGGTLPNEIGNIKNLTLLALDGNNFYGPIPPSLGNCTHLSVLRLNENQFSGTIPPSIGKLTNLTDVRFFTNYLNGTVPREFGNLSSLVVLHLAENNFIGELPPQVCKSGKLVNFSAAYNGFTGPIPVSLRNCPSLYRVRIEYNMLTGYADEDFGVYPNLTYIDFSYNRIQGEISSNWAGCENLQVLRMAGNSISGNIPAEIFRLSQLAELDVSSNQLSGEIPQEIGDPSTLYELNFSGNRLFGVIPVEFGRLSGLQSLDLSMNMLLGQIPNTIGNLNNLLKLNLSNNNLNGTIPYQIGNLAALQDFLDLSFNSLSGKIPDDLDKLENLISLNISHNNLSGSIPESITKMLSLSFINLSYNHLEGPMPKGRIFNSSSTADLSNNENLCGNIKGLQPCDVSINVPSSTSNKHKVLVPLLASLGGALFLSLLCVAIFFFIYKQNSGSSRQNSLNKRPNPFSIWYFNGRVVYADIIEATKNFDSECCIGEGALGQVYKAVMKGGQVFAVKKLKCDEENLDSESIKTFKNEVAAMNETRHRNIVKLYGFCSEGLHTFLIYEYMDRGSLADMLGNDLRALELDWPKRVDIVKGVASALSYMHHDCNPPLIHRDISSKNVLLSSDLKAHVSDFGTARFLKPNSPIWTVFAGTYGYAAPELAYTMAVTEKCDVFSFGVLALEVLIGRHPGDLVSYLQTTTNQSINFKEILDPRVSPPNDDKHVLKELALIANLSLSCLQTNPQTRPTMRTVAQLLDMGNNS 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc36g00008 952 FunFam Nuclear pore complex protein NUP107 39 176 - -
Stsc36g00008 952 SMART serkin_6 677 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc36g00008 952 SMART LRR_typ_2 475 499 IPR003591 -
Stsc36g00008 952 SMART LRR_typ_2 524 548 IPR003591 -
Stsc36g00008 952 SMART LRR_typ_2 283 307 IPR003591 -
Stsc36g00008 952 SMART LRR_typ_2 154 178 IPR003591 -
Stsc36g00008 952 SMART LRR_typ_2 451 474 IPR003591 -
Stsc36g00008 952 SMART LRR_typ_2 106 130 IPR003591 -
Stsc36g00008 952 SMART LRR_typ_2 403 427 IPR003591 -
Stsc36g00008 952 SMART LRR_typ_2 235 259 IPR003591 -
Stsc36g00008 952 FunFam Leucine-rich repeat receptor protein kinase MSP1 639 756 - -
Stsc36g00008 952 SUPERFAMILY L domain-like 267 595 - -
Stsc36g00008 952 Gene3D Ribonuclease Inhibitor 116 182 IPR032675 -
Stsc36g00008 952 Gene3D Ribonuclease Inhibitor 271 598 IPR032675 -
Stsc36g00008 952 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 285 599 - -
Stsc36g00008 952 Pfam Leucine rich repeat 429 488 IPR001611 GO:0005515
Stsc36g00008 952 Gene3D Transferase(Phosphotransferase) domain 1 757 952 - -
Stsc36g00008 952 SUPERFAMILY Protein kinase-like (PK-like) 651 946 IPR011009 -
Stsc36g00008 952 FunFam MDIS1-interacting receptor like kinase 2 757 952 - -
Stsc36g00008 952 ProSiteProfiles Protein kinase domain profile. 677 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc36g00008 952 Gene3D Phosphorylase Kinase; domain 1 640 756 - -
Stsc36g00008 952 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Stsc36g00008 952 Gene3D Ribonuclease Inhibitor 183 270 IPR032675 -
Stsc36g00008 952 Pfam Leucine Rich Repeat 526 547 IPR001611 GO:0005515
Stsc36g00008 952 ProSitePatterns Tyrosine protein kinases specific active-site signature. 802 814 IPR008266 GO:0004672|GO:0006468
Stsc36g00008 952 FunFam Leucine-rich repeat receptor protein kinase EMS1 185 279 - -
Stsc36g00008 952 Pfam Protein kinase domain 682 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc36g00008 952 SUPERFAMILY L domain-like 69 345 - -
Stsc36g00008 952 PANTHER LEUCINE RICH REPEAT KINASE 2 232 948 - -
Stsc36g00008 952 Gene3D Ribonuclease Inhibitor 36 115 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc36g00008 Stsc-Chr36 75915 83114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc36g00008 42 850 Receptor kinase-like Gene Family AT4G08850 40.088 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc36g00008 Pkinase 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc36g00008 - - aip:107632555 1569.67