Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc369g00001 ATGGCTTCCTCCAACAGACATTGGCCAAGCATGTTCAAATCCAAGCCTTGCAACCAGTTTCAGCATGACATCAACTCCCCTCTCGTCTCAACTACTGCACCTTGCAGATCAACTCCTTACAATCCGAACTCAGGATGTGATGAGAAGAGTCCAGAACCGAAGCCAAGATGGAACCCAAAACCAGAACAGATTCGGATTCTGGAAGCCATATTCAATTCTGGAATGGTGAACCCTCCAAGGGATGAGATAAGGAAGATAAGGATACAGTTGCAGGAGTACGGTCAAGTGGGTGACGCAAATGTCTTTTACTGGTTCCAGAACCGCAAATCTCGGAGCAAGCACAAGCTTCGCCACCTCACTAATAACAAGAACAACACTCCATCACCACCGCAGCCGCCGCCACCACAATTCATCTCTGCCATTACTAACTCATCATCCTCCTCTTCCTCGGAGAAATCATCTCCCAAGGAATTCATCACTACCTTCGTCCCACAAGCTTTCACCGATGTGATGATGGTGCTGCCTAATTCTCCAACTGCCTCCGTGAACCAGAACTATTTTCAACACAACGACATCAACATCAATAATAACCATCATCATCTTTTAATTCCTCCGCCGCCACCGCCGCAGCCGCTACCGATGGAACCATTCTTCCCTGTGTTCCATAATGGTGGCAGTAATAATAACAATACTTCCATGGTTGCAACAACTGAGATCTCTAATAATGTGATTAATCATCACCAACCTCCTCATCATTTTGTTTACCCATCAATATCACACCATGCTCATCAAGAAAACGTTGATCCTTGCACTGATCTGCTTCTTAGCGAGATCATGAACCATGGAGGAGGAGGAGGAGGACCCTCCTCTAAGAAATACCAAGAACAAGAAAAGGCAGCAGCAGCGGCCGCCATCAAAATTAGGCACCCATCACAGCAGTACATCAACTTCTGTCAAGCATCCACACCGGTATCAACCATGGCGGTTCTGCCTCCTCTTCCTCCTCATTCTTCCATCAGTAACACAACCGCCACACCTATTACTGTTCCATCCCCATTTCAAGGTGGTGGTGGTGGCGGCGGTGGTGATGTGGCAGCAGGGAAATGTACGGTGTACATAAACGAGGTGGCATTCGAAGTTGGTGTGGGTCACTTTAATGTGCGTGAGGCTTTTGGAGATGAGGCGGTGCTTATCGAATACTCCGGCCACGCCGTTCTCACCGATGACTGGGGCGTCACCCTCCACCCTCTCCAGCATGGCGCTTCTTACTATCTCATCTGGTTTCTTTCTTTCTTTCTCTAA 1302 0.4808 MASSNRHWPSMFKSKPCNQFQHDINSPLVSTTAPCRSTPYNPNSGCDEKSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRIQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLTNNKNNTPSPPQPPPPQFISAITNSSSSSSSEKSSPKEFITTFVPQAFTDVMMVLPNSPTASVNQNYFQHNDININNNHHHLLIPPPPPPQPLPMEPFFPVFHNGGSNNNNTSMVATTEISNNVINHHQPPHHFVYPSISHHAHQENVDPCTDLLLSEIMNHGGGGGGPSSKKYQEQEKAAAAAAIKIRHPSQQYINFCQASTPVSTMAVLPPLPPHSSISNTTATPITVPSPFQGGGGGGGGDVAAGKCTVYINEVAFEVGVGHFNVREAFGDEAVLIEYSGHAVLTDDWGVTLHPLQHGASYYLIWFLSFFL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc369g00001 433 Gene3D - 54 119 - -
Stsc369g00001 433 Pfam Homeodomain 54 114 IPR001356 GO:0003677
Stsc369g00001 433 MobiDBLite consensus disorder prediction 23 59 - -
Stsc369g00001 433 CDD homeodomain 53 115 IPR001356 GO:0003677
Stsc369g00001 433 MobiDBLite consensus disorder prediction 138 156 - -
Stsc369g00001 433 FunFam WUSCHEL-related homeobox 11 54 121 - -
Stsc369g00001 433 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 427 IPR044557 GO:0003700|GO:0050793
Stsc369g00001 433 MobiDBLite consensus disorder prediction 23 45 - -
Stsc369g00001 433 ProSiteProfiles 'Homeobox' domain profile. 50 115 IPR001356 GO:0003677
Stsc369g00001 433 MobiDBLite consensus disorder prediction 119 156 - -
Stsc369g00001 433 SUPERFAMILY Homeodomain-like 49 117 IPR009057 -
Stsc369g00001 433 SMART HOX_1 52 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc369g00001 Stsc-Chr369 8044 9626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc369g00001 1 122 Wox Gene Family AT2G33880 80.645 3.37e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc369g00001 Homeodomain 9.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc369g00001 - - pvu:PHAVU_006G179900g 368.237