LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc367g00004	ATGAAGATTGGTTGGAACCTGAAAACTGGCCTTAACAGGCAGTTATCAGCATGGAAGAATTGGGATGACCCTTCTAAAGGAGATTTAACCTGGGGCGTTGTTCTTGGGACCACCCCTGAGTTGGTTATGTGGAAAGGCACAACAGAGTACTATAGGAGTGGTCCATGGAATGGTGAAAGATTCAGTGGCAAAACTACATCCCTTTTTCAATTAGAATTCGTGTCCACCAATGATGAGTTGTTTTACACATACAACCTCAACAAGGACTCATCACTGATCACAAGAGTTGTTCTAAATGAATCGGCTTATTCGCGTCAGCGCTACAATTGGATCCCGGAGAACCAGACTTGGCGATTGTATTCGTCGGTGCCTCGCGATTATTGTGACAACTATAATCTCTGTGGTGCTTATGGGAACTGCCTTGTGAATGAGTCACCCCCCTGCGAGTGTCTAACAGGCTTCAAGCCCAAGTTATCGCGACAGTGGGAGGCATTGGATTGGACTGAAGGATGTATTCAAAGTGAAGAGTGGAAATGCAGGGAGAAAAATAGAGACGGATTTCAGAGATTTAGTGGGTTGAAAATGCCGGATACTACTAAGTCTTGGGCAAGTGGGAATTTGACGCTTGATGATTGCAGGGTCAAGTGCTGGCAGAATTGTTCTTGTGCTGCCTATGCAAACTTAGACATTAGAGGAGAAGGGAGTGGCTGCCAAATTTGGTTTGGAGATTTAATGGATCTCAGGGTTGCTTCGGTTCCAGGGCAAGATTTGTACGTTCGGATGCATACATCATCAACTGGTTCCTCTAACAAAACAAATTCAAGCGAAGAAAGTTCAAAGCGTGGACAAAGGAAAAAGCTTGTTGTGGCAATTCCAGTTAGCTTTCTCTTGGTTCTTATGATTGTTTTAACTTTCATTTACCTTTATTGGAGGAAAAGAAAGCTTAGAGAAAAAATAGAAAATATATCACAAGAAAGGGGAGATGAAGCCCGTGAAAACAAATTCGAGCTTCCATTCTTTGAATTTGACACAATAGTTCGTGCCACTAATAACTTCTCAAGTGATAAGAGGCTTGGCCAAGGTGGTTTCGGGCCCGTCTACATGGGTACATTAATTGATGGGAAAGAGGTTGCAGTGAAAAGGTTGGGGCATATGTCTGGACAAGGAGTGAGAGAATTTAAGAATGAAGTTATATTATGTGCAAAACTTCAACACCGCAATCTTGTTAAAGTTCTTGGTTGTTGCATCCAAGGAGAAGAAAGAATACTGATCTATGAATATATGCCCAATAAAAGTCTAGATTCCTTTCTGTTTGATTCTTCTCAAAGAGAAATTCTTGATTGGCCTAGACGATTCAACATCATATTTGGAATTGCTCGTGGACTTCTTTATCTTCACCAAGACTCAAGATTGAGAATTATACATAGAGATCTTAAAACAAGTAATATTTTATTAGATAACGAATTGAACCCAAAAATTTCAGACTTTGGAATCGCACGGATGTTTGCTGAAAATCAAATAGAAGCAAATACGAAAATGATAGCAGGGACATATGGCTATATGGCACCAGAATATGCAATTGACGGGAGATTCTCCATCAAATCTGATATTTTTAGCTTTGGAATCATATTGTTGGAAGTAGTAAGTGGAAGGAAAAACACAGGAGTTTTCTATCCGAACCAAGGATTTAATCTTCTAGGACATGCATGGAGATTATGGAAAGAAGGAACTCCAATGAAATTAGTAGATGCTTGTTTGGGAGATGCCTTTACAGTTTCGGAAGTTCTACGTTGTATACATATTGGTCTTTTATGTGTGCAATTGCATCCAGAGGATAGGCCAAACATGTCATCAGTGATTTTGATGCTGAACAGTGAGAATAATACTTTGCCTCAACCAAAGGAACCCGGTTTCCTTATAGAAAGGATGTCAATAAATGAAGCAGGGAAAACCTCATCCGATGAAAATAAGATTAATTCATCAACTAATGAAATCACTGATACATTGTTAGAGGCCAGATAG	2022	0.4001	MKIGWNLKTGLNRQLSAWKNWDDPSKGDLTWGVVLGTTPELVMWKGTTEYYRSGPWNGERFSGKTTSLFQLEFVSTNDELFYTYNLNKDSSLITRVVLNESAYSRQRYNWIPENQTWRLYSSVPRDYCDNYNLCGAYGNCLVNESPPCECLTGFKPKLSRQWEALDWTEGCIQSEEWKCREKNRDGFQRFSGLKMPDTTKSWASGNLTLDDCRVKCWQNCSCAAYANLDIRGEGSGCQIWFGDLMDLRVASVPGQDLYVRMHTSSTGSSNKTNSSEESSKRGQRKKLVVAIPVSFLLVLMIVLTFIYLYWRKRKLREKIENISQERGDEARENKFELPFFEFDTIVRATNNFSSDKRLGQGGFGPVYMGTLIDGKEVAVKRLGHMSGQGVREFKNEVILCAKLQHRNLVKVLGCCIQGEERILIYEYMPNKSLDSFLFDSSQREILDWPRRFNIIFGIARGLLYLHQDSRLRIIHRDLKTSNILLDNELNPKISDFGIARMFAENQIEANTKMIAGTYGYMAPEYAIDGRFSIKSDIFSFGIILLEVVSGRKNTGVFYPNQGFNLLGHAWRLWKEGTPMKLVDACLGDAFTVSEVLRCIHIGLLCVQLHPEDRPNMSSVILMLNSENNTLPQPKEPGFLIERMSINEAGKTSSDENKINSSTNEITDTLLEAR	673

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc367g00004	673	CDD	PAN_AP_plant	180	260	-	-
	Stsc367g00004	673	Gene3D	Phosphorylase Kinase; domain 1	313	427	-	-
	Stsc367g00004	673	Pfam	S-locus glycoprotein domain	51	157	IPR000858	GO:0048544
	Stsc367g00004	673	MobiDBLite	consensus disorder prediction	650	673	-	-
	Stsc367g00004	673	Gene3D	Transferase(Phosphotransferase) domain 1	428	635	-	-
	Stsc367g00004	673	SUPERFAMILY	Protein kinase-like (PK-like)	335	623	IPR011009	-
	Stsc367g00004	673	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	76	652	-	-
	Stsc367g00004	673	SMART	serkin_6	352	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc367g00004	673	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	473	485	IPR008271	GO:0004672\|GO:0006468
	Stsc367g00004	673	Pfam	Domain of unknown function (DUF3403)	625	673	IPR021820	GO:0004674
	Stsc367g00004	673	Pfam	PAN-like domain	179	247	IPR003609	-
	Stsc367g00004	673	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	316	427	-	-
	Stsc367g00004	673	Coils	Coil	312	332	-	-
	Stsc367g00004	673	SMART	ntp_6	182	261	IPR003609	-
	Stsc367g00004	673	ProSiteProfiles	Protein kinase domain profile.	352	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc367g00004	673	CDD	STKc_IRAK	358	624	-	-
	Stsc367g00004	673	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	428	631	-	-
	Stsc367g00004	673	Pfam	Protein tyrosine and serine/threonine kinase	355	620	IPR001245	GO:0004672\|GO:0006468
	Stsc367g00004	673	ProSiteProfiles	PAN/Apple domain profile.	179	262	IPR003609	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc367g00004	Stsc-Chr367	14846	20278	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc367g00004	281	639	Receptor kinase-like Gene Family	AT4G23190	52.486	1.72e-131	398

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc367g00004		PK_Tyr_Ser-Thr	1.3e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc367g00004	-		-	gmx:100790436	844.728