Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc366g00002 ATGGCATTGTGTAACAAGCTTGGAAATTTACTGAGACAGAGTGCTCCCCGTAGCGGATCATCCATGCTCAATTATATTCGATGCATGTCCTCAAGCAGGCTTTTCATTGGGGGCCTTTCATATGGTGTTGATGACCAGAGTCTTAGGGATGCATTCTCCGGCTTTGGTGACGTGGTTGATGCGAGGGTGGTCACTGATAGAGACACTGGAAGATCAAGAGGTTTTGGATTTGTCAACTTCTCAAGCGACGAGTCTGCAGGCTCAGCACTCTCTGCAATGGATGGGCAGGATCTAAACGGCCGAGTGATTAGGGTGAGCTATGCAAATGATAGGCCACCTCGAGGTGGTGGCGGCGGTTTCGGTGGCGGCGGCGGTTACGGTGGTGGTGGCGGTGGTTACGGTGGAGGTAGCGGTGGTTACGGGGGAGGTGGTTACCGTGGAGGTGGAGGTGGTGGTTATGGTGATCCATCTTTCTAG 477 0.5304 MALCNKLGNLLRQSAPRSGSSMLNYIRCMSSSRLFIGGLSYGVDDQSLRDAFSGFGDVVDARVVTDRDTGRSRGFGFVNFSSDESAGSALSAMDGQDLNGRVIRVSYANDRPPRGGGGGFGGGGGYGGGGGGYGGGSGGYGGGGYRGGGGGGYGDPSF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc366g00002 158 SUPERFAMILY RNA-binding domain, RBD 29 142 IPR035979 GO:0003676
Stsc366g00002 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Stsc366g00002 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Stsc366g00002 158 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 156 - -
Stsc366g00002 158 SMART rrm1_1 33 106 IPR000504 GO:0003723
Stsc366g00002 158 Gene3D - 27 156 IPR012677 -
Stsc366g00002 158 CDD RRM2_NsCP33_like 33 108 - -
Stsc366g00002 158 MobiDBLite consensus disorder prediction 137 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc366g00002 Stsc-Chr366 10478 12465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc366g00002 7 114 Eukaryotic Initiation Factors Gene Family AT2G23350 28.704 7.17e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc366g00002 - - gmx:100527220 182.185