Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc36593g00001 GAGGGTGAGGGGATCGGTGTGAGGAGGTGGAGCGAGAGAAATGAGAGAGGGAAACACAGTGTGGTCCCCGGCATTGCCGAATGGAGAAATAAGGGGAGGCGTTTTGGGGTGGGAACATCAGGTGTTGTGGAGGTTCATGAAAAAGGGTTGGGCGATAGTGGATGTATGGAATTCGAACAAGGTTCTTACACGATCTTCTTGGATAACCTTGCAGCTTTGATTCTAAAAGGGGAGATATACAAGGAGTTCTGTCGATTTGGAACCATCACTGATGTGTATGTCTCGAGGAAGCAGAGAAGGAAGTGCAAGGGACCATTTGCTTTTATTAGATTTAAAGAATATGAAGGAGCTAAAAGAGCGATGGAATGGAAGAATGGTGCTTATTGGAAAGGAAAGAGAATCCATGTTACGCTGTCAAAGTATAGGAGAAGTAGTGACTGGAGGCCTACAG 451 0.459 EGEGIGVRRWSERNERGKHSVVPGIAEWRNKGRRFGVGTSGVVEVHEKGLGDSGCMEFEQGSYTIFLDNLAALILKGEIYKEFCRFGTITDVYVSRKQRRKCKGPFAFIRFKEYEGAKRAMEWKNGAYWKGKRIHVTLSKYRRSSDWRPT 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc36593g00001 150 SUPERFAMILY RNA-binding domain, RBD 56 146 IPR035979 GO:0003676
Stsc36593g00001 150 CDD RRM_SF 65 136 - -
Stsc36593g00001 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 135 IPR000504 GO:0003723
Stsc36593g00001 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Stsc36593g00001 150 SMART rrm1_1 64 137 IPR000504 GO:0003723
Stsc36593g00001 150 Gene3D - 57 150 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc36593g00001 Stsc-Chr36593 462 913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc36593g00001 59 136 Eukaryotic Initiation Factors Gene Family AT2G36660 29.487 7.30e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc36593g00001 - K13190 ahf:112794598 76.2553