Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc364g00003 ATGGATGGCATTGATGATGATGATGATGCAAGGTATCCCCCTAACCGTTATGGCGATAATCGTAGCCAAGTTTATGATTATCAGGATAATAATGATGTGGACGAAGAAGATGATGAGCAGTTAGGAGAGGGTGAAGATGATGGTATAGATCAAAGAAACGGTTTTGAGATTTCCCAAAAGGATGCTGATGACAATGATGAAGGGGAAGATGATACAGATGGAGATGGCCATGATCATGATGATAACATTGATGAATGTAATAATGATAATGATGACAGTCGTGCCACTAAGATTGGAGATGGTGTGGAGTGGCACCCAAAAAAGCAAAAGCTGAAGAGTTTGGTTTCTGCCTATGAACTTGCACCTCTGGTGCCAGCACCATCAACTGCGGCTACCTCAGCTCCTAAACCATCTTCAGGTGGTAGGAATTCACTTACTGACTGGACTGAGCATGAGACATTTGTTCTTCTTGATGCTTGGGGTGATCGGTTTCTTCAACATGGAAGGAAGAGTCTTCGCTCTGATGAATGGCATGAAGTTGCAGAAGAGGTATCAAAGATTTCAAAAGTTGATAGGACGGATACCCAGTGTAGAAATCGTATTGATACATTGAAGAAAAAATACAAAAAGGAGATGATGAAGTTTCCTACAATGGGTGTTGGAAGTAGCAAATGGCTTTACTTCGAAAGGATGAATAAGCTAATGTCTCCTCCACCACAACAGACAAGTCTCCCCTGTGAAATGCAATCACAAAAGCATGCCGCTATTAACTCTAGAGTTAATTTGAACCTTGCAAATGAAGTAGATAAGATGAAGAATAGTCCTGAGACTACAGAATCTACTAGCGAAGATGGTTTGGTTGAGCCTCGTGGAAAGAAAAGGAAGAAAAGAAGGTGCAATGACAACCCATGTTCATTCAGATTGCTAGCTGATTCCATTCATAAGTTCAGTAAGATATATGAGAAGATTGAAAATAGTAAAAGGCAGCAGATGGTGGAGCTGGAGAAGATGAGGATGGATTTGCATAAGGAATTGGAGACACAGAAGAGGCAGATTCTGGAGAGAGTACAGAGTAAGATTTGGAAACTAGAGCAGGGAGATGACGAGAATGATGATTCTGCTGAGAATGGTATGTGA 1137 0.4116 MDGIDDDDDARYPPNRYGDNRSQVYDYQDNNDVDEEDDEQLGEGEDDGIDQRNGFEISQKDADDNDEGEDDTDGDGHDHDDNIDECNNDNDDSRATKIGDGVEWHPKKQKLKSLVSAYELAPLVPAPSTAATSAPKPSSGGRNSLTDWTEHETFVLLDAWGDRFLQHGRKSLRSDEWHEVAEEVSKISKVDRTDTQCRNRIDTLKKKYKKEMMKFPTMGVGSSKWLYFERMNKLMSPPPQQTSLPCEMQSQKHAAINSRVNLNLANEVDKMKNSPETTESTSEDGLVEPRGKKRKKRRCNDNPCSFRLLADSIHKFSKIYEKIENSKRQQMVELEKMRMDLHKELETQKRQILERVQSKIWKLEQGDDENDDSAENGM 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc364g00003 378 Coils Coil 320 351 - -
Stsc364g00003 378 MobiDBLite consensus disorder prediction 29 45 - -
Stsc364g00003 378 FunFam trihelix transcription factor ASIL2 148 210 - -
Stsc364g00003 378 MobiDBLite consensus disorder prediction 79 103 - -
Stsc364g00003 378 MobiDBLite consensus disorder prediction 62 78 - -
Stsc364g00003 378 MobiDBLite consensus disorder prediction 1 103 - -
Stsc364g00003 378 MobiDBLite consensus disorder prediction 272 290 - -
Stsc364g00003 378 MobiDBLite consensus disorder prediction 131 146 - -
Stsc364g00003 378 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 133 367 IPR044823 -
Stsc364g00003 378 Pfam Myb/SANT-like DNA-binding domain 147 234 IPR044822 -
Stsc364g00003 378 Gene3D - 148 210 - -
Stsc364g00003 378 ProSiteProfiles Myb-like domain profile. 148 205 IPR001005 -
Stsc364g00003 378 MobiDBLite consensus disorder prediction 127 146 - -
Stsc364g00003 378 MobiDBLite consensus disorder prediction 46 61 - -
Stsc364g00003 378 MobiDBLite consensus disorder prediction 269 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc364g00003 Stsc-Chr364 8727 9863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc364g00003 306 365 Trihelix Transcription Factor Family AT3G14180 45.000 8.26e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc364g00003 Myb_DNA-bind_4 6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc364g00003 - - ahf:112703693 544.273