Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc364g00002 ATGTTTCTAGAAGAAGGCAGGATCCTCCAGACTTCTCAGATTGTTCCAGAAACCCCAACACAAAAACCCTTTCTCCTCCTCCTCTCTCTCTTTGCTCTCTTCTCCCTCCTCGATCGATTTGTTAGATATTTTTATTGGTTGGGAGATCACTCAAAGATGAGCGTGGTTGGTTTTGATTTTGGTAATGAGAGCTGCATTGTTGCTGTTGCGAGGCAGAGGGGGATTGATGTTGTGCTCAACGATGAGTCCAAGCGTGAAACTCCTGCGGTTGTATGCTTCGGTGACAAACAACGGTTCATTGGGACAGCTGGGGCTGCATCTACAATGATGAACCCAAAGAATTCAATCTCGCAGATAAAGCGCTTAATCGGCAGACAATTTTCGGATCCTGAACTGCAAAGAGATCTGAAGTCATTGCCTTTCTCAGTTACTGAAGGTCCTGATGGATTTCCATTAATCCATGCAAGATACTTGGGTGAATCTAAAGCATTTACACCTACCCAAGTCATGGCAATGGTGTTATCAAATCTTAAAGAGATTGCTGAGAAAAACCTAAATGCAGCTGTAGTTGATTGTTGCATTGGTATTCCAGTTTATTTTACTGATCTTCAGAGGAGGGCAGTCATGGATGCTGCTACTATTGCTGGTTTGCACCCACTTCGTCTGCTTCATGAAACAACAGCAACTGCTTTGGCCTATGGAATTTATAAAACAGATCTTCCTGAAAATGATCCACTGAATGTTGCGTTTGTTGATGTTGGGCATGCTAGCATGCAAGTGTGCATTGCTGGTTTTAAAAAAGGGCAGCTGAAAGTGTTGGCTCATTCATATGATAGGTCTTTAGGGGGTAGAGATTTTGACGAAGTTCTGTTCCATCACTTTGCTGCCAAATTCAAAGAGGAATATAAAATTGATGTTTTACAGAATGCAAGAGCTTCACTAAGGCTGAGGGCTGCTTGTGAGAAGCTCAAGAAGGTGCTTAGTGCAAATCCGGAAGCACCTCTGAATATTGAGTGCTTAATGGACGAGAAGGATGTCAGGGGCTTTATCAAACGTGACGAGTTTGAGCAACTAAGTGTTCCAATTTTGGAACGCGTGAAGAGACCTTTGGAGAAGGCACTTACTGAAGCGGGACTTACAGTCGAGAATATACACATGGTTGAGATAGTTGGTTCAGGTTCTAGAGTACCAGCCATAAACAAAATCCTAACAGATTTTTTCAAAAAGGATCCTAGAAGGACAATGAATGCTAGTGAATGTGTAGCCAGGGGTTGTGCATTGCAGTGTGCAATTCTTAGTCCAACATTTAAAGTAAGAGAGTTTCAGGTCAATGAAAGCTTTCCTTTCTCAATCTCTCTTTCGTGGAAAGGTTCTGGTCCTGATTCACAAGATAGTGGACCAGATAATAAGCAAAGCACTGTTGTTTTCCCCAAGGGAAATCCTATACCAAGTATCAAGGCTCTGACATTTTATAGGCCAGGGACCTTTTCTGTTGATGTACAATATGATGATGTCAGTGAGTTGCAAACACCTGCTAAGATCAGCACATATACGGTTGGCCCATTTCAATCTACCAAAGTTGAAAAGGCTAAAATTAAAGTTAGAGTGCGACTGAATCTGCATGGAATTGTATCTCTTGAGTCTGCCACTCTCATTGAGGAGGAAGAGATTGAGATTCCAGTTTCCAAAGAATCAGCTGGAGAAGAGACCAAGATGGAAACTGATGAAGCAGCAGCTGCTGCTGCTGCTGCTGATGGTCCTGCACCTCCTAGCTCGACTGATAATGATGTTAATATGCAAGATGCCAAGGCAACAACAGATGCCAATGAAACCACAGGTGCTGCAGCAGGGGAAAATGGTGTTCCGGAGGCAGACAAGCCTGTCCAGATGGAGACTGATAACAAGGTTGAGGCTCCAAAGAAAAAGGTAAAGAAAACCAATATTCCTGTGGCAGAGGTGGTATATGGAGCACTGGCACCTGTGGATGTCCAGAAGGCTGTAGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGAGTGATGGAGGAAACAAAAGACAAGAAAAATGCAGTGGAGGCTTACGTTTATGACATGAGAAACAAGCTTAATGACAGATACCACGAGTTTGTCACTGAATCAGAGAAGGAAGCCTTAATTACTAAACTTCAGGAGGTGGAAGACTGGTTATATGAGGATGGTGAAGATGAGACCAAAGGTGTATACGTTGCCAAACTCGATGAGCTTAAGAAGCAAGGAGATCCAATTGAAGAACGATACAGAGAATCCATGGAGAGGGGTGCCGTAATTGATCAACTTATCTACTGTATAAATAGTTACAGAGAAGCTGCAATGTCAAATGATCCCAAGTTTGATCACATTGAACTTGAGGAGAAGCAGAAGGTCCTAAATGAATGTGTAGAGGCTGAGAATTGGCTCCGGGAGAAAAAGCAGCAGCAGGACTCTCTTCCAAAATATGCAAACCCTGTGCTGCTGTCAGCTGAAATAAGAAAGAAAGCCGAGGCTGTTGATAGGTTCTGTAAGCCAATAATGACTAAACCCAGACCAGCAAAACCAGCAACACCAGAAGCCCCAGCAACTCCCCCACCTCAGGGTGGCGAGCAGCAGCAGCCGCAGGAGAATGCCAATGCCAATGCTAATGGTAATGGCAGTCCTAATGAGAATGCTGGGGACAGTGGAAACAATCAAGCCCCACCGGAGGCCGGAGAACCAATGGAGACTGATAAATCAGAGAACACAGGCTCTGCGTAA 2766 0.4393 MFLEEGRILQTSQIVPETPTQKPFLLLLSLFALFSLLDRFVRYFYWLGDHSKMSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAVVCFGDKQRFIGTAGAASTMMNPKNSISQIKRLIGRQFSDPELQRDLKSLPFSVTEGPDGFPLIHARYLGESKAFTPTQVMAMVLSNLKEIAEKNLNAAVVDCCIGIPVYFTDLQRRAVMDAATIAGLHPLRLLHETTATALAYGIYKTDLPENDPLNVAFVDVGHASMQVCIAGFKKGQLKVLAHSYDRSLGGRDFDEVLFHHFAAKFKEEYKIDVLQNARASLRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLSVPILERVKRPLEKALTEAGLTVENIHMVEIVGSGSRVPAINKILTDFFKKDPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSGPDSQDSGPDNKQSTVVFPKGNPIPSIKALTFYRPGTFSVDVQYDDVSELQTPAKISTYTVGPFQSTKVEKAKIKVRVRLNLHGIVSLESATLIEEEEIEIPVSKESAGEETKMETDEAAAAAAAADGPAPPSSTDNDVNMQDAKATTDANETTGAAAGENGVPEADKPVQMETDNKVEAPKKKVKKTNIPVAEVVYGALAPVDVQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDRYHEFVTESEKEALITKLQEVEDWLYEDGEDETKGVYVAKLDELKKQGDPIEERYRESMERGAVIDQLIYCINSYREAAMSNDPKFDHIELEEKQKVLNECVEAENWLREKKQQQDSLPKYANPVLLSAEIRKKAEAVDRFCKPIMTKPRPAKPATPEAPATPPPQGGEQQQPQENANANANGNGSPNENAGDSGNNQAPPEAGEPMETDKSENTGSA 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc364g00002 921 Gene3D Actin; Chain A, domain 4 282 365 - -
Stsc364g00002 921 MobiDBLite consensus disorder prediction 871 900 - -
Stsc364g00002 921 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 773 856 IPR029048 -
Stsc364g00002 921 Gene3D - 57 426 - -
Stsc364g00002 921 SUPERFAMILY Actin-like ATPase domain 53 237 IPR043129 -
Stsc364g00002 921 FunFam Heat shock 70 kDa protein 14 439 656 - -
Stsc364g00002 921 SUPERFAMILY Actin-like ATPase domain 247 432 IPR043129 -
Stsc364g00002 921 Gene3D - 766 852 IPR029048 -
Stsc364g00002 921 FunFam Heat shock 70 kDa protein 4 90 165 - -
Stsc364g00002 921 MobiDBLite consensus disorder prediction 853 870 - -
Stsc364g00002 921 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 658 758 IPR029048 -
Stsc364g00002 921 MobiDBLite consensus disorder prediction 591 613 - -
Stsc364g00002 921 MobiDBLite consensus disorder prediction 560 575 - -
Stsc364g00002 921 FunFam Heat shock 70 kDa protein 4 53 129 - -
Stsc364g00002 921 Gene3D - 660 765 IPR029048 -
Stsc364g00002 921 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 436 570 IPR029047 -
Stsc364g00002 921 Pfam Hsp70 protein 55 759 IPR013126 GO:0005524|GO:0140662
Stsc364g00002 921 Gene3D - 238 412 - -
Stsc364g00002 921 PRINTS 70kDa heat shock protein signature 54 67 - -
Stsc364g00002 921 PRINTS 70kDa heat shock protein signature 384 400 - -
Stsc364g00002 921 PRINTS 70kDa heat shock protein signature 82 94 - -
Stsc364g00002 921 PRINTS 70kDa heat shock protein signature 415 435 - -
Stsc364g00002 921 PRINTS 70kDa heat shock protein signature 192 212 - -
Stsc364g00002 921 PRINTS 70kDa heat shock protein signature 529 545 - -
Stsc364g00002 921 MobiDBLite consensus disorder prediction 848 921 - -
Stsc364g00002 921 FunFam Heat shock 70 kDa protein 4 161 257 - -
Stsc364g00002 921 CDD HSPA4_like_NDB 54 433 - -
Stsc364g00002 921 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 439 587 IPR029047 -
Stsc364g00002 921 FunFam Heat shock 70 kDa protein 4 282 365 - -
Stsc364g00002 921 FunFam Heat shock 70 kDa protein 4 658 768 - -
Stsc364g00002 921 Gene3D - 90 165 - -
Stsc364g00002 921 MobiDBLite consensus disorder prediction 560 632 - -
Stsc364g00002 921 PANTHER HSC70CB, ISOFORM G-RELATED 53 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc364g00002 Stsc-Chr364 3063 8212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc364g00002 56 490 Calmodulin-binding Proteins AT1G16030 35.845 2.26e-87 291