Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc362g00006 ATGGCGGCCTCTCCTAGTTGCTCAATTCAACGACGATTGCCAAGATCATGGAAATATCATGTTTTCTTGAGTTTCAGGGGTGAAGACACTCGCACAGGGTTCACTAGCCATCTCTATGCAGCTCTCACCAGGAAGGGTATCACTACCTACAAAGATGACTACAGCCTTCGCAAAGGTGACGTCATTTCAGATGAACTTCTCAAAGCAATTGAAGGCTCCATGTTTGGTGTCATTGTTCTCTCACCAAACTATGCTTCATCCACGTGGTGCTTGGATGAGCTTTGCAAGATCCTTGACTGCAAGAACGAGCTGGGGCAACACATCGTGCCGGTATTCTATGGTGTGGAGCCTTCTGATCTGAGGCACCACAAAGGAACCTTCGGAGAAGCTTTCAGGAAACATGAACAGAGACAAGACGGTGAGAAGGTTAAAAGATGGAGAGATGCGTTAACACAAGTTGCCAGTTACTCTGGTTGGAGCTCCAAAAATCAGAATGAGGCAACATTGGTGGAAAACATATCTCAAAGTATACATAAAATTTTGATCCCAAACTTGCCATCTTCCATGAAGAATCTTGTAGGCATCGATTCAAGAGTGGAGCAAGTGATTAATCACATTGGTATTGGATTGGATGATGTTCGTTATATAGGCATATGTGGAATGGGTGGCCTAGCACAAAAAGACCTTCTTGTCCATATCAATGGAAGCTCGAGTGAAATTGATAATGAGTATGATGGGAGGAGAATAATTCAGGCTTCTTTGTGTCACAAAAAGGTTCTTCTTGTTCTTGATGATATAAATAAAGAAAAACAGTTGAGGAATTTGGCTGAGGATCAAGACTGGTTTGGTTCTGGAAGCAGAATAATTATCACAACTAGAGACATGCAACTTCTGAAGATACATGATGCACATGAAATTTACAATGTTGAAGGGTTGGCAGAAAATGAAGCCTTTGACCTCTTTCGTTTGAAGGCTTTTAAGCAACGAAAGCCTGAAGAAGAGTATTTGGATTTATCCAATCAGGTGGTCAAATATTGTGCTGGTCTTCCATTGGCACTTGAGGTATTGGGTTCCCATCTTTATGGTAGATCTATTGAAGATTGGCATAGTGCTCTTGGAAAATTAAAGAGCTTTCCACATGTCGACATTTTTGAGACCTTGAAAATAAGTTATGATGGTTTAGATTCCATGGATAAGGATACTTTTTTAGACATTGCTTATTTTTTCAAAGGATATTCTAAAAAATATGTAATAAATATATTAGAAAGGCGTGGTTATCATGTTGAAATTGGTATCACTACTTTGATGGATAGATCTCTACTCACTATAAATAACAAAGCAGGATGGGGTGAGTCTCTGGAGATGCATGATTTGATTGAAGAAATGGGGAAACATATTGTAATTCAAGAATCTCCAAATGATCCTAGCAAGCGTAGCAGGTTGCGGTGTTACGAAGACATCGATCTTGTTCTTACTCAAAACAAGGGCACTGAAGCAACACATAGCATCGTTTTGCCCGATAACTTCCATCAAAACCAACGTGATATGTTATATAAAAAACAGTATGAAGTGCGTTGGAGAGATTTAACCTTTTCAAATATATCTCAGCTAAGGGTCCTCGTTTTGAATCGTTTAAAGGCTCCCATTGTCAGCTATATTCCTTGTTCATTAAGAGTTTTGCGTTGGGAATTTTGTCCGATGAAAACTCTGCCATTTATAGATCAATACTATGAACTTGTTGAAATTGATCTACAAAATAGCTCCAGCATTGTACAAGTATGGCATGGAAAAAAGTTTCTGGAAAAGCTGAAGTACTTAAGGCTGCGTAATTGCTCTCGGCTGAAACAGATTCCAGATATTTCTGAAGCTCCCAATCTTGAAATACTTGACGTTGAAGGTTGTTGTGAACTGGATGATTTTCCCTCGGATCTCACACTCCACAATAGCCTAGTTGAACTTGTTTTAATGCCTTGCTCAAGTGGTTCTCTTGGGAGTAAATTGGAGATGAGTTTCCTCAAGGAACTAGATCTTGGCCGCTGTACAAGTTTGAGGAAACTTCCAGAATTTGGAGAATGCATGAAACATTTATCAATTCTTTCTTTGCGGAGAACAGCCATAAAAGAACTACCCAAATCGGTTGGTTGTCTAGTTGGCCTATCTAATTTGGATTTAGAGGGTTGCGAAAAACTTCATTGTCTTCCCTCATCAATTGGCTGTTTAATTGGCCTAAACAAGTTAAACCTAAAAAACTGCAAAAGGCTTACTTGCCTTCCAAACGGCATTCAAGAGTTAAAATCCCTCACATATTTGAATCTTCATGATTGCCCAAATGTCTATCAATCTTTGCATTTTCTCTCTGGTCTGACGTCATTGGTTAATCTGAATTTAAGGGCATGTTTTCACACATCTCAAGAGTCATTGTCTTACAATCTTGGCCACTTAGTGTCTTTGACTGATTTGGATTTATCAGATAACAATTTTGAAAGGGTTCCAATAAATATCCATGAACTCCCCAAGCTTAGATATCTGAATCTAGAAAATTGCCTTCATCTTAAAGTGTTACCAGAGCTTCCATCAAGTATAAGAAAGTTACAAGCACGGAATTGTATTACACTGGATTCATGGAATTCTAATGTTATATCAAAGGCCTGTTGTGGCTTTGCAGCATCAACTAAGTATTATCCTGGTGAGCTCTTGCAAATGTGTGTGACACAGAAGCAAATAAGGTTGAACATAGGGGATGAAATTTCATTGTGGTTTGTCCATCAGGAGCAGGGTAATGCAGTATCAGTCACTTTGCCACATAATGAAACCATGGCACTTGCTCTCTGTTTCCGAGTATGCCGACTAAAGTGGAGTGGGAATCATAACAACTATTTTTTAGATGCTTCTGTAATTTGCAATGGTAAAACATTAATAAAAAAGTTTGCTACAAAGATGGCATGGGACGGGGAAACTAAATATGCTCAGCTTTTGATCTTCTGCTTCACCAGTGACTATTTTGTTGACCAATTTTGCCAAGACTATTGCTTCGAACTGGTACTTTCTAAACAAGATCCAATTGAAGTACAGAGTTCTGGGGCTCGTTGGGTGTGCAAGGAAGACATTCAAAGATTTGAAGAAACAAAATGTGGAACTGAAACATGA 3147 0.3905 MAASPSCSIQRRLPRSWKYHVFLSFRGEDTRTGFTSHLYAALTRKGITTYKDDYSLRKGDVISDELLKAIEGSMFGVIVLSPNYASSTWCLDELCKILDCKNELGQHIVPVFYGVEPSDLRHHKGTFGEAFRKHEQRQDGEKVKRWRDALTQVASYSGWSSKNQNEATLVENISQSIHKILIPNLPSSMKNLVGIDSRVEQVINHIGIGLDDVRYIGICGMGGLAQKDLLVHINGSSSEIDNEYDGRRIIQASLCHKKVLLVLDDINKEKQLRNLAEDQDWFGSGSRIIITTRDMQLLKIHDAHEIYNVEGLAENEAFDLFRLKAFKQRKPEEEYLDLSNQVVKYCAGLPLALEVLGSHLYGRSIEDWHSALGKLKSFPHVDIFETLKISYDGLDSMDKDTFLDIAYFFKGYSKKYVINILERRGYHVEIGITTLMDRSLLTINNKAGWGESLEMHDLIEEMGKHIVIQESPNDPSKRSRLRCYEDIDLVLTQNKGTEATHSIVLPDNFHQNQRDMLYKKQYEVRWRDLTFSNISQLRVLVLNRLKAPIVSYIPCSLRVLRWEFCPMKTLPFIDQYYELVEIDLQNSSSIVQVWHGKKFLEKLKYLRLRNCSRLKQIPDISEAPNLEILDVEGCCELDDFPSDLTLHNSLVELVLMPCSSGSLGSKLEMSFLKELDLGRCTSLRKLPEFGECMKHLSILSLRRTAIKELPKSVGCLVGLSNLDLEGCEKLHCLPSSIGCLIGLNKLNLKNCKRLTCLPNGIQELKSLTYLNLHDCPNVYQSLHFLSGLTSLVNLNLRACFHTSQESLSYNLGHLVSLTDLDLSDNNFERVPINIHELPKLRYLNLENCLHLKVLPELPSSIRKLQARNCITLDSWNSNVISKACCGFAASTKYYPGELLQMCVTQKQIRLNIGDEISLWFVHQEQGNAVSVTLPHNETMALALCFRVCRLKWSGNHNNYFLDASVICNGKTLIKKFATKMAWDGETKYAQLLIFCFTSDYFVDQFCQDYCFELVLSKQDPIEVQSSGARWVCKEDIQRFEETKCGTET 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc362g00006 1048 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 159 IPR035897 -
Stsc362g00006 1048 SUPERFAMILY L domain-like 455 876 - -
Stsc362g00006 1048 ProSiteProfiles Leucine-rich repeat profile. 816 838 IPR001611 GO:0005515
Stsc362g00006 1048 Gene3D - 311 395 IPR042197 -
Stsc362g00006 1048 Pfam TIR domain 18 186 IPR000157 GO:0007165
Stsc362g00006 1048 Pfam NB-ARC domain 250 391 IPR002182 GO:0043531
Stsc362g00006 1048 Gene3D Ribonuclease Inhibitor 503 666 IPR032675 -
Stsc362g00006 1048 Gene3D Ribonuclease Inhibitor 668 885 IPR032675 -
Stsc362g00006 1048 Gene3D - 15 184 IPR035897 -
Stsc362g00006 1048 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 182 - -
Stsc362g00006 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 405 IPR027417 -
Stsc362g00006 1048 SMART till_3 18 156 IPR000157 GO:0007165
Stsc362g00006 1048 PRINTS Disease resistance protein signature 346 360 - -
Stsc362g00006 1048 PRINTS Disease resistance protein signature 667 683 - -
Stsc362g00006 1048 PRINTS Disease resistance protein signature 215 230 - -
Stsc362g00006 1048 Gene3D - 225 306 IPR027417 -
Stsc362g00006 1048 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 735 IPR044974 GO:0006952
Stsc362g00006 1048 ProSiteProfiles TIR domain profile. 17 181 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc362g00006 Stsc-Chr362 32640 36620 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc362g00006 12 797 WRKY Transcription Factor Family AT4G12020 28.521 6.57e-70 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc362g00006 - - ahf:112769348 1317.37