Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc360g00003 ATGGAATTGGACCTTGTACATTTAAGGCCAATTTACTGCTCCTTTGCAAATTTAAGGATTATAAAATTCTTGTGTTGGGGAAACATGGTTGATGCAATAGTTTGTTATCTAAGGCATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGACGTGTATGAGTTCTTCTCGAGGGCGGGCAAGGTGCGAGATGTTCGGTTGATTATGGACCGCAATACAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTACTGGTCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGCTATAGGCCCATATTCTGGGGGAGCTAGAAGGCTATATGTCGGCAATCTGCATTTCAATATGACTGAAACTGATCTTCGTACAGTGTTTGAAGCATTCGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTCGAAGATGCTAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAGGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGTAGTGGCACTGCACCTAGCATGGCTGGTTCAGCTGGTAATGCTGCTCTCAACGGCACTGGCCTTAATATGCCTGCAACAGTGGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGTGGTCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCCAATGACGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAATGCTCTAAGTTTGGGAAGTTAAAGCACATCTTTGTTGATAAGAATAGCTCTGGTTTTGTATACTTACAGTTCGAAAATACTCAATCTGCAACGAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACGTACGAGGATAAATTCCCAGATAGCAGATGA 1305 0.4383 MELDLVHLRPIYCSFANLRIIKFLCWGNMVDAIVCYLRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNTRRSKGVGYIEFYDVMSVPMAIALTGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGAIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDFDDDEGGGLSLNASSRALLMQKLNRSGTAPSMAGSAGNAALNGTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECLMLKNMFDPNDEKEPDFDLDIKEDVEAECSKFGKLKHIFVDKNSSGFVYLQFENTQSATSAQRALHGRWFAGKMITASFMVPQTYEDKFPDSR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc360g00003 434 SUPERFAMILY RNA-binding domain, RBD 162 426 IPR035979 GO:0003676
Stsc360g00003 434 Gene3D - 35 144 IPR012677 -
Stsc360g00003 434 CDD RRM3_RBM39_like 339 421 - -
Stsc360g00003 434 Gene3D - 155 262 IPR012677 -
Stsc360g00003 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 340 423 IPR000504 GO:0003723
Stsc360g00003 434 SUPERFAMILY RNA-binding domain, RBD 53 139 IPR035979 GO:0003676
Stsc360g00003 434 FunFam RNA-binding protein 39 isoform X1 51 143 - -
Stsc360g00003 434 NCBIfam splicing factor, CC1-like family 39 432 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc360g00003 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 135 IPR000504 GO:0003723
Stsc360g00003 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 364 416 IPR000504 GO:0003723
Stsc360g00003 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 127 IPR000504 GO:0003723
Stsc360g00003 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 233 IPR000504 GO:0003723
Stsc360g00003 434 FunFam Splicing factor, CC1-like protein 335 434 - -
Stsc360g00003 434 FunFam CC1-like, splicing factor 157 265 - -
Stsc360g00003 434 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 253 358 IPR029123 -
Stsc360g00003 434 SMART rrm2_1 341 419 IPR003954 GO:0003676
Stsc360g00003 434 SMART rrm2_1 163 235 IPR003954 GO:0003676
Stsc360g00003 434 CDD RRM1_RBM39_like 59 131 - -
Stsc360g00003 434 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 38 433 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc360g00003 434 Gene3D - 335 434 IPR012677 -
Stsc360g00003 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 239 IPR000504 GO:0003723
Stsc360g00003 434 SMART rrm1_1 59 131 IPR000504 GO:0003723
Stsc360g00003 434 SMART rrm1_1 163 235 IPR000504 GO:0003723
Stsc360g00003 434 SMART rrm1_1 341 419 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc360g00003 Stsc-Chr360 4917 9002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc360g00003 59 225 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 3.02e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc360g00003 K13091 - gmx:100789839 665.996